Factsheet for TraesCS7D01G312100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G083100.1
TraesCS6B01G114000.1
TraesCS6D01G076900.1
TraesCS7A01G315100.1	nucleus
TraesCS7B01G215600.1	nucleus
TraesCS7D01G312100.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25320.1	TraesCS6A01G083100.1	AT4G12080.1	21798944
AT4G25320.1	TraesCS6B01G114000.1	AT4G12080.1	21798944
AT4G25320.1	TraesCS6D01G076900.1	AT4G12080.1	21798944
AT4G25320.1	TraesCS7A01G315100.1	AT4G25320.1	23335615
AT4G25320.1	TraesCS7B01G215600.1	AT4G25320.1	23335615
AT4G25320.1	TraesCS7D01G312100.1	AT4G25320.1	23335615
AT4G25320.1	TraesCS7A01G315100.1	AT5G51590.1	23335615
AT4G25320.1	TraesCS7B01G215600.1	AT5G51590.1	23335615
AT4G25320.1	TraesCS7D01G312100.1	AT5G51590.1	23335615
AT4G25320.1	TraesCS7A01G315100.1	AT5G51590.1	23335615
AT4G25320.1	TraesCS7B01G215600.1	AT5G51590.1	23335615
AT4G25320.1	TraesCS7D01G312100.1	AT5G51590.1	23335615
AT5G51590.1	TraesCS7A01G315100.1	AT5G51590.1	23335615
AT5G51590.1	TraesCS7B01G215600.1	AT5G51590.1	23335615
AT5G51590.1	TraesCS7D01G312100.1	AT5G51590.1	23335615

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G315100.1	Wheat	plastid	98.24	97.99
TraesCS7B01G215600.1	Wheat	plastid	96.47	97.21
HORVU7Hr1G075040.1	Barley	plastid	94.21	95.17
Os08t0118000-01	Rice	nucleus	71.28	76.08
KXG24283	Sorghum	plastid	73.3	74.05
Zm00001d049661_P001	Maize	cytosol, peroxisome, plasma membrane	72.04	73.15
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	51.13	60.42
GSMUA_Achr1P19840_001	Banana	nucleus	53.65	55.91
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	52.9	54.97
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	49.12	50.0
TraesCS6D01G076900.1	Wheat	nucleus	47.1	47.22
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	40.05	45.3
Solyc03g007150.2.1	Tomato	nucleus	37.03	45.23
KRH34345	Soybean	nucleus	37.03	44.55
KRG92455	Soybean	nucleus	36.02	43.33
KRH09229	Soybean	nucleus	37.03	42.73
PGSC0003DMT400079651	Potato	nucleus	36.78	42.2
KRH38723	Soybean	nucleus	36.02	41.57
PGSC0003DMT400071865	Potato	plastid	31.23	40.26
TraesCS5D01G274900.1	Wheat	plastid	28.21	38.23
Solyc06g035430.2.1	Tomato	nucleus	32.24	36.99
TraesCS7D01G247300.2	Wheat	mitochondrion, nucleus, peroxisome, plastid	32.24	34.59
CDX94457	Canola	nucleus	32.75	34.39
CDY16785	Canola	nucleus	33.25	33.67
Bra035899.1-P	Field mustard	nucleus	33.25	33.67
CDX87241	Canola	nucleus	33.0	33.5
CDX89422	Canola	nucleus	32.24	33.33
CDX86910	Canola	nucleus	33.25	33.08
CDX92693	Canola	nucleus	33.0	33.08
Bra019174.1-P	Field mustard	nucleus	33.0	33.08
Bra013886.1-P	Field mustard	nucleus	31.74	33.07
CDY49703	Canola	nucleus	33.0	32.83
AT5G62260.3	Thale cress	nucleus	33.25	32.67
CDY00271	Canola	nucleus	33.0	32.51
Bra010070.1-P	Field mustard	nucleus	33.0	32.51
AT4G25320.1	Thale cress	nucleus	33.0	32.43
AT5G51590.1	Thale cress	nucleus	34.01	32.22
TraesCS5D01G138000.1	Wheat	plastid	29.47	31.88
Bra029164.1-P	Field mustard	nucleus	33.25	31.13
CDY38874	Canola	nucleus	33.0	30.97
CDY30710	Canola	nucleus	30.98	30.67
CDY32624	Canola	nucleus	32.75	30.66
CDY00488	Canola	nucleus	33.0	30.54
TraesCS7D01G133700.1	Wheat	cytosol	17.63	30.43
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	30.73	30.42
Bra028265.1-P	Field mustard	nucleus	32.75	30.3
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	30.98	29.85
CDX99902	Canola	nucleus	32.75	29.61
Bra022555.1-P	Field mustard	nucleus	31.23	29.59
CDY65097	Canola	nucleus	30.98	29.36
CDX91598	Canola	nucleus	30.98	29.36
TraesCS7D01G134100.1	Wheat	nucleus	25.44	27.9
TraesCS1D01G194900.2	Wheat	nucleus	31.74	27.75
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	25.94	25.43
TraesCS5D01G274800.1	Wheat	cytosol	0.5	1.71

Protein Annotations

EnsemblPlants:TraesCS7D01G312100.1	EnsemblPlantsGene:TraesCS7D01G312100	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PANTHER:PTHR31500:SF15	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856	TIGR:cd11378
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:395602550..395605483

Molecular Weight (calculated)

39773.1 Da

IEP (calculated)

9.984

GRAVY (calculated)

-0.013

Length

397 amino acids

Sequence
(BLAST)

001: MEAKPGEASS PTATAAAAAP VAAAAAAVVP EATVSFQSPA SVPPPTASHA PAPSPVEMVS SSGLFVPPGM MTAMVAAAGR GALSAGPLVK VGKKRGRPRK
101: YGPDGSLIQP LNATPISASA PMSAAVAAGQ YTPAAAVGAA MKRGRGRPLD FAAAAAKPYH HQLHQPPQQQ FGFHFSSIGD MVACSAGGNF TPHIITVAPG
201: EDVTMKVISF SQQGPRAICI LSANGVISNV TLRQPDSSGG TLTYEGRFEL LSLSGSFMPT ENSGARSRSG GMSVSLASPD GRVVGGGVAG LLVAASPVQI
301: VVGSFLPSYP MEPKQKKARV SAAPPLSQAP PAVQLSSADT HSSEQGQHSS AAPRMNVVTS SAYSADQNWA STVVQSAPAE ASRSTSSGDL NLTASGS

Best Arabidopsis Sequence Match ( AT4G12080.1 )
(BLAST)

001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT

Arabidopsis Description

AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.