Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G083100.1 | Wheat | cytosol, nucleus, peroxisome | 94.95 | 94.95 |
| TraesCS6B01G114000.1 | Wheat | cytosol, nucleus, peroxisome | 92.93 | 94.12 |
| HORVU0Hr1G015180.2 | Barley | cytosol, extracellular | 55.56 | 93.22 |
| Zm00001d015090_P001 | Maize | extracellular | 48.48 | 72.45 |
| KXG29351 | Sorghum | plastid | 65.91 | 69.6 |
| Os02t0125200-00 | Rice | mitochondrion | 57.07 | 61.58 |
| PGSC0003DMT400045285 | Potato | cytosol | 19.7 | 52.7 |
| VIT_02s0025g05130.t01 | Wine grape | cytosol, nucleus, peroxisome | 40.66 | 48.79 |
| TraesCS7D01G312100.1 | Wheat | plastid | 47.22 | 47.1 |
| KRH57315 | Soybean | nucleus | 38.89 | 47.09 |
| Solyc08g079630.2.1 | Tomato | nucleus | 38.13 | 47.04 |
| PGSC0003DMT400010017 | Potato | plastid | 37.88 | 47.02 |
| KRH04046 | Soybean | nucleus | 39.14 | 46.83 |
| PGSC0003DMT400032575 | Potato | plastid | 38.13 | 46.6 |
| CDY07239 | Canola | plasma membrane | 26.77 | 45.89 |
| Solyc08g007530.2.1 | Tomato | nucleus | 37.88 | 45.73 |
| VIT_15s0048g00870.t01 | Wine grape | nucleus | 38.38 | 45.51 |
| Solyc01g091370.2.1 | Tomato | nucleus | 36.11 | 44.97 |
| KRH00569 | Soybean | cytosol, peroxisome, plastid | 37.88 | 44.38 |
| KRH65263 | Soybean | cytosol, nucleus, plastid | 38.64 | 44.22 |
| KRH76268 | Soybean | cytosol, nucleus, plastid | 38.64 | 44.22 |
| PGSC0003DMT400033227 | Potato | cytosol, nucleus, peroxisome | 36.62 | 43.67 |
| KRH40594 | Soybean | nucleus | 37.12 | 43.62 |
| Bra037321.1-P | Field mustard | nucleus | 34.09 | 42.72 |
| CDY07238 | Canola | nucleus | 34.09 | 42.72 |
| AT4G00200.2 | Thale cress | nucleus | 33.84 | 42.14 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 34.85 | 41.95 |
| CDY47428 | Canola | nucleus | 32.58 | 41.75 |
| Bra019359.1-P | Field mustard | nucleus | 34.6 | 41.64 |
| Bra013646.1-P | Field mustard | nucleus | 32.07 | 41.64 |
| CDY04392 | Canola | nucleus | 28.03 | 41.42 |
| CDX98767 | Canola | nucleus | 34.34 | 41.34 |
| CDY41291 | Canola | nucleus | 31.57 | 40.98 |
| CDX82971 | Canola | plastid | 21.97 | 40.47 |
| AT4G12080.1 | Thale cress | nucleus | 36.36 | 40.45 |
| Bra033121.1-P | Field mustard | nucleus | 31.57 | 40.32 |
| AT4G22770.1 | Thale cress | nucleus | 33.84 | 40.12 |
| TraesCS5D01G274900.1 | Wheat | plastid | 25.51 | 34.47 |
| TraesCS7D01G247300.2 | Wheat | mitochondrion, nucleus, peroxisome, plastid | 30.3 | 32.43 |
| TraesCS5D01G138000.1 | Wheat | plastid | 26.77 | 28.88 |
| TraesCS2D01G448900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 28.54 | 27.43 |
| TraesCS7D01G133700.1 | Wheat | cytosol | 15.66 | 26.96 |
| TraesCS1D01G194900.2 | Wheat | nucleus | 29.29 | 25.55 |
| TraesCS7D01G134100.1 | Wheat | nucleus | 22.98 | 25.14 |
| TraesCS2D01G597900.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 23.74 | 23.21 |
| TraesCS5D01G274800.1 | Wheat | cytosol | 2.02 | 6.84 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G076900.1 | EnsemblPlantsGene:TraesCS6D01G076900 | Gene3D:3.30.1330.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:AT_hook_DNA-bd_motif | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 | PANTHER:PTHR31500:SF42 |
| PFAM:PF03479 | PFscan:PS51742 | SEG:seg | SMART:SM00384 | SUPFAM:SSF117856 | TIGR:cd11378 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:41443164..41447138
Molecular Weight (calculated)
39754.5 Da
IEP (calculated)
10.065
GRAVY (calculated)
-0.195
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: METAMETSPP VPETKKEPAP PAAAQPAPET KKGPTQPAPE TKKEPTPPAP APSPPPPAPA AAVVAAARGD GKRKRGRPRK YGPDGGLLRP LNATPISASV
101: PDDSGGGHYT PASAVGAAMK RGRGRPVGFI SRAAPVVAMP MTAATPTPAV VVSTPPPPAP MSSSVAAAAA APTQQLVPPL GDVVGCASGA NFTPHILNVA
201: TGEDINMKVI SFSQQGPRAI CILSANGVIS NVTLRQHDSL GGTVTYEGRF ELLSLSGSFT PTEKGGSRDR CGGMSVALAA ADGRVIGGGV AGLLVAASPV
301: QVVVGSFLPS YQMEQNGKKP VIEMKTVAAQ PAMGFTISSG GDMEDSYSGG QARPGKGASA FRVENWTAQP VASAPPAAEA RRTPPSEAAK VPVSGG
101: PDDSGGGHYT PASAVGAAMK RGRGRPVGFI SRAAPVVAMP MTAATPTPAV VVSTPPPPAP MSSSVAAAAA APTQQLVPPL GDVVGCASGA NFTPHILNVA
201: TGEDINMKVI SFSQQGPRAI CILSANGVIS NVTLRQHDSL GGTVTYEGRF ELLSLSGSFT PTEKGGSRDR CGGMSVALAA ADGRVIGGGV AGLLVAASPV
301: QVVVGSFLPS YQMEQNGKKP VIEMKTVAAQ PAMGFTISSG GDMEDSYSGG QARPGKGASA FRVENWTAQP VASAPPAAEA RRTPPSEAAK VPVSGG
001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
Arabidopsis Description
AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.