Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os04t0589900-01 | |
| Os10t0572900-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G12080.1 | Os04t0589900-01 | AT4G17950.1 | 21798944 |
| AT4G12080.1 | Os10t0572900-02 | AT4G17950.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015090_P001 | Maize | extracellular | 60.22 | 83.4 |
| HORVU0Hr1G015180.2 | Barley | cytosol, extracellular | 49.05 | 76.27 |
| KXG29351 | Sorghum | plastid | 68.12 | 66.67 |
| TraesCS6B01G114000.1 | Wheat | cytosol, nucleus, peroxisome | 61.85 | 58.06 |
| TraesCS6A01G083100.1 | Wheat | cytosol, nucleus, peroxisome | 62.13 | 57.58 |
| TraesCS6D01G076900.1 | Wheat | nucleus | 61.58 | 57.07 |
| PGSC0003DMT400045285 | Potato | cytosol | 21.8 | 54.05 |
| CDY07239 | Canola | plasma membrane | 29.7 | 47.19 |
| Os08t0118000-01 | Rice | nucleus | 46.05 | 45.43 |
| VIT_02s0025g05130.t01 | Wine grape | cytosol, nucleus, peroxisome | 40.05 | 44.55 |
| PGSC0003DMT400010017 | Potato | plastid | 37.33 | 42.95 |
| Solyc08g079630.2.1 | Tomato | nucleus | 37.33 | 42.68 |
| KRH57315 | Soybean | nucleus | 37.87 | 42.51 |
| KRH04046 | Soybean | nucleus | 37.6 | 41.69 |
| PGSC0003DMT400032575 | Potato | plastid | 36.78 | 41.67 |
| VIT_15s0048g00870.t01 | Wine grape | nucleus | 37.87 | 41.62 |
| Solyc08g007530.2.1 | Tomato | nucleus | 35.97 | 40.24 |
| Os10t0572900-02 | Rice | nucleus | 27.52 | 40.24 |
| KRH65263 | Soybean | cytosol, nucleus, plastid | 37.6 | 39.88 |
| KRH76268 | Soybean | cytosol, nucleus, plastid | 37.6 | 39.88 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 34.88 | 38.91 |
| Bra019359.1-P | Field mustard | nucleus | 34.6 | 38.6 |
| KRH00569 | Soybean | cytosol, peroxisome, plastid | 35.42 | 38.46 |
| CDX98767 | Canola | nucleus | 34.33 | 38.3 |
| KRH40594 | Soybean | nucleus | 35.15 | 38.28 |
| Solyc01g091370.2.1 | Tomato | nucleus | 32.97 | 38.05 |
| AT4G00200.2 | Thale cress | nucleus | 32.97 | 38.05 |
| Bra013646.1-P | Field mustard | nucleus | 31.34 | 37.7 |
| CDY07238 | Canola | nucleus | 32.43 | 37.66 |
| Bra037321.1-P | Field mustard | nucleus | 32.43 | 37.66 |
| CDY47428 | Canola | nucleus | 31.34 | 37.22 |
| CDY41291 | Canola | nucleus | 30.79 | 37.05 |
| AT4G12080.1 | Thale cress | nucleus | 35.69 | 36.8 |
| Bra033121.1-P | Field mustard | nucleus | 31.06 | 36.77 |
| PGSC0003DMT400033227 | Potato | cytosol, nucleus, peroxisome | 33.24 | 36.75 |
| AT4G22770.1 | Thale cress | nucleus | 32.7 | 35.93 |
| CDY04392 | Canola | nucleus | 25.89 | 35.45 |
| CDX82971 | Canola | plastid | 19.35 | 33.02 |
| Os09t0491708-01 | Rice | nucleus | 30.79 | 31.48 |
| Os08t0512400-02 | Rice | nucleus | 29.97 | 31.07 |
| Os11t0149100-01 | Rice | cytosol, nucleus, peroxisome | 30.52 | 30.6 |
| Os12t0147000-00 | Rice | nucleus | 28.61 | 27.56 |
| Os04t0589900-01 | Rice | nucleus | 27.79 | 26.91 |
| Os06t0326000-01 | Rice | nucleus | 26.43 | 25.66 |
| Os02t0824300-01 | Rice | nucleus | 25.61 | 23.86 |
| Os04t0683900-01 | Rice | nucleus | 21.25 | 18.62 |
Protein Annotations
| EnsemblPlants:Os02t0125200-00 | EnsemblPlantsGene:Os02g0125200 | Gene3D:3.30.1330.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 | PANTHER:PTHR31500:SF42 | PFAM:PF03479 |
| PFscan:PS51742 | ProteinID:BAS76756.1 | SEG:seg | SUPFAM:SSF117856 | UniParc:UPI000393A4DC | UniProt:A0A0P0VEE1 |
| MapMan:35.1 | : | : | : | : | : |
Description
Similar to DNA-binding protein. (Os02t0125200-00)
Coordinates
chr2:+:1313881..1318611
Molecular Weight (calculated)
39223.8 Da
IEP (calculated)
12.522
GRAVY (calculated)
-0.457
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: ELLSWSPRRR PRRLRRLRLP LRSRRRRRRR RRSRRRRRWQ WRRRRRQPIS RQRRWFQSPW QVRRRGEGTG RGRGGGRGST GRYTPAAAVG AVMKRGRGRP
101: VGFVSRASPV SVAVTAATST AAVVVSSPAT HTQTPLGPLG ELVACASGAN FTPHIINVAA GEDVNMKVIS FSQQGPRAIC ILSANGVISN VTLRQQDTLG
201: GTVTYEGRFE LLSLSGSFTP TDSGGTRSRS GGMSVSLAAT DGRVIGGGVA GLLVAASPVQ VVVGSFLPSY QLDQNATKKP VIEITTVPPP PPAIGFTISS
301: GDPMEDSYSG SHGQHRSGAA AATTTTAKAN STSAFRVENW TPPAPPAAEA ARTKTPSSEA KVPVPGA
101: VGFVSRASPV SVAVTAATST AAVVVSSPAT HTQTPLGPLG ELVACASGAN FTPHIINVAA GEDVNMKVIS FSQQGPRAIC ILSANGVISN VTLRQQDTLG
201: GTVTYEGRFE LLSLSGSFTP TDSGGTRSRS GGMSVSLAAT DGRVIGGGVA GLLVAASPVQ VVVGSFLPSY QLDQNATKKP VIEITTVPPP PPAIGFTISS
301: GDPMEDSYSG SHGQHRSGAA AATTTTAKAN STSAFRVENW TPPAPPAAEA ARTKTPSSEA KVPVPGA
001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
Arabidopsis Description
AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.