CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04337
KRH28286
KRH58200
KRH77206

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12080.1	KRH04337	AT4G17950.1	21798944
AT4G12080.1	KRH28286	AT4G17950.1	21798944
AT4G12080.1	KRH58200	AT4G17950.1	21798944
AT4G12080.1	KRH77206	AT4G17950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57315	Soybean	nucleus	93.96	95.11
VIT_02s0025g05130.t01	Wine grape	cytosol, nucleus, peroxisome	74.92	75.15
PGSC0003DMT400010017	Potato	plastid	66.47	68.97
Solyc08g079630.2.1	Tomato	nucleus	66.77	68.85
PGSC0003DMT400032575	Potato	plastid	66.16	67.59
Solyc08g007530.2.1	Tomato	nucleus	66.16	66.77
CDY04392	Canola	nucleus	49.55	61.19
Bra019359.1-P	Field mustard	nucleus	59.82	60.18
CDX94122	Canola	cytosol, nucleus, plasma membrane	59.82	60.18
CDX98767	Canola	nucleus	59.52	59.88
CDY47428	Canola	nucleus	54.98	58.9
AT4G12080.1	Thale cress	nucleus	63.14	58.71
AT4G22770.1	Thale cress	nucleus	58.31	57.78
Bra033121.1-P	Field mustard	nucleus	53.47	57.1
CDY41291	Canola	nucleus	52.57	57.05
Bra013646.1-P	Field mustard	nucleus	52.57	57.05
KRH76268	Soybean	cytosol, nucleus, plastid	57.7	55.2
KRH65263	Soybean	cytosol, nucleus, plastid	57.1	54.62
KRH00569	Soybean	cytosol, peroxisome, plastid	54.98	53.85
KRH40594	Soybean	nucleus	54.68	53.71
CDX82971	Canola	plastid	34.14	52.56
KRH34345	Soybean	nucleus	52.27	52.42
KRG92455	Soybean	nucleus	51.66	51.82
HORVU0Hr1G015180.2	Barley	cytosol, extracellular	36.25	50.85
KRH09229	Soybean	nucleus	52.27	50.29
KRH38723	Soybean	nucleus	50.76	48.84
Zm00001d015090_P001	Maize	extracellular	38.97	48.68
KRH05193	Soybean	plastid	19.94	44.9
KXG29351	Sorghum	plastid	47.73	42.13
KRH65066	Soybean	nucleus	41.09	40.0
TraesCS6B01G114000.1	Wheat	cytosol, nucleus, peroxisome	47.13	39.9
KRH40471	Soybean	nucleus	40.79	39.59
KRH48165	Soybean	nucleus	40.48	39.41
KRH00715	Soybean	nucleus	40.48	39.18
TraesCS6D01G076900.1	Wheat	nucleus	46.83	39.14
TraesCS6A01G083100.1	Wheat	cytosol, nucleus, peroxisome	46.53	38.89
Os02t0125200-00	Rice	mitochondrion	41.69	37.6
KRH20019	Soybean	nucleus	41.99	36.68
KRH77536	Soybean	nucleus	38.37	35.57
KRH27929	Soybean	nucleus	37.76	35.51
KRH32644	Soybean	plastid	39.88	33.33
KRH59866	Soybean	nucleus	34.74	32.67
KRH51558	Soybean	nucleus	34.14	31.83
KRH60876	Soybean	nucleus	33.53	31.09
KRH41165	Soybean	nucleus	32.93	30.97
KRH58200	Soybean	nucleus	33.23	30.39
KRH04337	Soybean	nucleus	30.82	28.65
KRH68809	Soybean	nucleus	29.91	28.61
KRH28286	Soybean	plastid	29.0	28.32
KRH77206	Soybean	nucleus	28.4	27.81
KRG97062	Soybean	nucleus	30.21	27.7
KRH25156	Soybean	cytosol	20.85	26.54
KRH30520	Soybean	nucleus	27.19	24.32

Protein Annotations

EMBL:ACUP02010375	EnsemblPlants:KRH04046	EnsemblPlantsGene:GLYMA_17G136200	EntrezGene:100794202	Gene3D:3.30.1330.80	InterPro:IPR005175
InterPro:PPC_dom	PANTHER:PTHR31500	PANTHER:PTHR31500:SF43	PFAM:PF03479	PFscan:PS51742	ProteinID:KRH04046
ProteinID:KRH04046.1	SEG:seg	SUPFAM:SSF117856	UniParc:UPI000233E944	UniProt:I1MUV6	MapMan:35.1

Description

hypothetical protein

Coordinates

chr17:-:10982415..10988350

Molecular Weight (calculated)

34089.7 Da

IEP (calculated)

9.860

GRAVY (calculated)

-0.111

Length

331 amino acids

Sequence
(BLAST)

001: METSGGVSGG VTLVGSDAPS DYHVAPRTDN PAPASGSTTQ IPATAGSVPP SPHPPHTAAM EAYPAKMPAK KKRGRPRKYA PDGSVTMALS PKPISSSAPL
101: PPVIDFSSEK RGKIKPTSSV SKAKFELENL GEWVACSVGA NFTPHIITVN SGEDVTMKVI SFSQQGPRAI CILSANGVIS SVTLRQPDSS GGTLTYEGRF
201: EILSLSGSFM PSESGGTRSR SGGMSVSLAS PDGRVVGGGV AGLLVAASPV QVVVGSFLAG NQHEQKPRKQ RHEVITSVIP AAVVPISTLD PVPILSAASS
301: IRNDNWSAMP AEAKNKPADI NVSLPAGFVF M

Best Arabidopsis Sequence Match ( AT4G12080.1 )
(BLAST)

001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT

Arabidopsis Description

AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.