Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47428 | Canola | nucleus | 96.27 | 83.5 |
| CDX82971 | Canola | plastid | 50.0 | 62.33 |
| AT4G12080.1 | Thale cress | nucleus | 82.09 | 61.8 |
| CDY41291 | Canola | nucleus | 62.69 | 55.08 |
| CDX98767 | Canola | nucleus | 64.93 | 52.89 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 64.93 | 52.89 |
| KRH57315 | Soybean | nucleus | 60.82 | 49.85 |
| KRH04046 | Soybean | nucleus | 61.19 | 49.55 |
| VIT_02s0025g05130.t01 | Wine grape | cytosol, nucleus, peroxisome | 60.82 | 49.39 |
| PGSC0003DMT400032575 | Potato | plastid | 57.84 | 47.84 |
| PGSC0003DMT400010017 | Potato | plastid | 56.72 | 47.65 |
| Solyc08g007530.2.1 | Tomato | nucleus | 58.21 | 47.56 |
| Solyc08g079630.2.1 | Tomato | nucleus | 56.72 | 47.35 |
| CDY07238 | Canola | nucleus | 42.16 | 35.76 |
| HORVU0Hr1G015180.2 | Barley | cytosol, extracellular | 29.85 | 33.9 |
| CDX84679 | Canola | nucleus | 32.84 | 33.59 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 32.84 | 33.59 |
| CDY07239 | Canola | plasma membrane | 28.73 | 33.33 |
| Zm00001d015090_P001 | Maize | extracellular | 32.84 | 33.21 |
| KXG29351 | Sorghum | plastid | 43.28 | 30.93 |
| CDX94457 | Canola | nucleus | 40.3 | 28.57 |
| TraesCS6A01G083100.1 | Wheat | cytosol, nucleus, peroxisome | 42.16 | 28.54 |
| TraesCS6B01G114000.1 | Wheat | cytosol, nucleus, peroxisome | 41.04 | 28.13 |
| TraesCS6D01G076900.1 | Wheat | nucleus | 41.42 | 28.03 |
| CDX89422 | Canola | nucleus | 39.93 | 27.86 |
| CDY49703 | Canola | nucleus | 40.67 | 27.32 |
| CDX92693 | Canola | nucleus | 40.3 | 27.27 |
| CDY37070 | Canola | nucleus | 33.96 | 26.69 |
| CDY27354 | Canola | nucleus | 34.33 | 26.36 |
| CDX87241 | Canola | nucleus | 38.43 | 26.34 |
| CDX86910 | Canola | nucleus | 38.81 | 26.07 |
| CDY16785 | Canola | nucleus | 38.06 | 26.02 |
| Os02t0125200-00 | Rice | mitochondrion | 35.45 | 25.89 |
| CDY41028 | Canola | nucleus, plastid | 23.88 | 25.81 |
| CDY00271 | Canola | nucleus | 38.81 | 25.81 |
| CDY25500 | Canola | nucleus | 35.07 | 25.41 |
| CDY30710 | Canola | nucleus | 37.69 | 25.19 |
| CDY45364 | Canola | nucleus | 34.33 | 25.07 |
| CDY37704 | Canola | nucleus | 35.07 | 25.07 |
| CDY38874 | Canola | nucleus | 39.55 | 25.06 |
| CDY32624 | Canola | nucleus | 39.55 | 25.0 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 33.58 | 24.86 |
| CDX89109 | Canola | nucleus | 30.97 | 24.78 |
| CDY42495 | Canola | nucleus | 30.97 | 24.56 |
| CDY00488 | Canola | nucleus | 39.18 | 24.48 |
| CDX71746 | Canola | nucleus | 31.34 | 24.42 |
| CDY48928 | Canola | nucleus | 31.34 | 24.42 |
| CDY34355 | Canola | nucleus | 34.33 | 24.34 |
| CDY51561 | Canola | nucleus | 30.6 | 24.12 |
| CDX91598 | Canola | nucleus | 37.69 | 24.11 |
| CDY58791 | Canola | nucleus | 29.48 | 24.09 |
| CDY01503 | Canola | cytosol | 23.13 | 23.94 |
| CDX99902 | Canola | nucleus | 38.81 | 23.69 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 35.07 | 23.62 |
| CDY65097 | Canola | nucleus | 36.57 | 23.39 |
| CDY46385 | Canola | nucleus | 32.09 | 22.51 |
| CDY39751 | Canola | nucleus | 32.09 | 22.51 |
| CDX78814 | Canola | nucleus | 33.21 | 21.87 |
| CDY41027 | Canola | cytosol | 21.64 | 21.8 |
| CDY26693 | Canola | plastid | 21.64 | 21.48 |
| CDY35172 | Canola | nucleus | 27.99 | 21.25 |
| CDY03203 | Canola | nucleus | 28.36 | 21.23 |
| CDY26694 | Canola | cytosol, plastid | 20.52 | 20.99 |
| CDY44500 | Canola | nucleus | 32.84 | 20.95 |
| CDY26692 | Canola | nucleus | 23.51 | 20.79 |
| CDY08882 | Canola | nucleus | 33.21 | 20.46 |
| CDX76549 | Canola | nucleus | 33.21 | 20.23 |
| CDY26691 | Canola | cytosol, plastid | 23.13 | 19.94 |
| CDY01506 | Canola | nucleus | 22.01 | 19.6 |
| CDY68252 | Canola | nucleus | 21.64 | 19.53 |
| CDY21122 | Canola | nucleus | 27.61 | 19.17 |
| CDY30005 | Canola | nucleus | 27.24 | 19.16 |
| CDY52506 | Canola | nucleus | 24.63 | 18.91 |
| CDY52477 | Canola | nucleus | 25.75 | 18.75 |
| CDY65362 | Canola | nucleus | 25.75 | 18.55 |
| CDY05594 | Canola | nucleus | 24.63 | 18.54 |
| CDY13231 | Canola | nucleus | 25.0 | 16.34 |
Protein Annotations
| EnsemblPlants:CDY04392 | EnsemblPlantsGene:GSBRNA2T00118383001 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF7 | PFAM:PF03479 | PFscan:PS51742 | ProteinID:CDY04392 | ProteinID:CDY04392.1 | SEG:seg |
| SUPFAM:SSF117856 | UniParc:UPI0004EF41E5 | MapMan:35.1 | : | : | : |
Description
BnaC02g28560D
Coordinates
chrLK031953:+:279502..283251
Molecular Weight (calculated)
28253.6 Da
IEP (calculated)
10.174
GRAVY (calculated)
-0.283
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLEMESTGE VRSTAGNGGG ITVVGSDAPS DFHIAARSES SNPSPNSVAP PLPQSHHTNQ LAIVAPTPQI SMAATTMMEG ISGVPMKKKR GRPRKYGPDG
101: AVVALSPKPI SSAPAPSHPI PASSHVIDFS ASEKRSKMKP TNSFNRTKFH HQVENLGEWV PCSVGGNFTP HVIAVNAGED VTMKIISFSQ QGPRAICVLS
201: ANGVISSVTL RQHDSSGGTL TYEGRFEILS LSGSFMPNDI GGTRSRTGGM SVSLASPDGR PQVRFRWL
101: AVVALSPKPI SSAPAPSHPI PASSHVIDFS ASEKRSKMKP TNSFNRTKFH HQVENLGEWV PCSVGGNFTP HVIAVNAGED VTMKIISFSQ QGPRAICVLS
201: ANGVISSVTL RQHDSSGGTL TYEGRFEILS LSGSFMPNDI GGTRSRTGGM SVSLASPDGR PQVRFRWL
001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
Arabidopsis Description
AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.