Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400052826 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G12080.1 | PGSC0003DMT400052826 | AT4G17950.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g007530.2.1 | Tomato | nucleus | 95.99 | 94.82 |
| PGSC0003DMT400010017 | Potato | plastid | 76.54 | 77.74 |
| VIT_02s0025g05130.t01 | Wine grape | cytosol, nucleus, peroxisome | 69.14 | 67.88 |
| KRH57315 | Soybean | nucleus | 67.9 | 67.28 |
| KRH04046 | Soybean | nucleus | 67.59 | 66.16 |
| PGSC0003DMT400045285 | Potato | cytosol | 27.16 | 59.46 |
| CDY04392 | Canola | nucleus | 47.84 | 57.84 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 57.41 | 56.53 |
| Bra019359.1-P | Field mustard | nucleus | 57.1 | 56.23 |
| CDX98767 | Canola | nucleus | 56.79 | 55.93 |
| CDY47428 | Canola | nucleus | 52.78 | 55.34 |
| AT4G12080.1 | Thale cress | nucleus | 60.49 | 55.06 |
| Bra033121.1-P | Field mustard | nucleus | 52.47 | 54.84 |
| AT4G22770.1 | Thale cress | nucleus | 55.86 | 54.19 |
| Bra013646.1-P | Field mustard | nucleus | 49.69 | 52.79 |
| CDX82971 | Canola | plastid | 34.88 | 52.56 |
| CDY41291 | Canola | nucleus | 49.38 | 52.46 |
| PGSC0003DMT400033227 | Potato | cytosol, nucleus, peroxisome | 51.85 | 50.6 |
| HORVU0Hr1G015180.2 | Barley | cytosol, extracellular | 36.11 | 49.58 |
| PGSC0003DMT400079651 | Potato | nucleus | 52.47 | 49.13 |
| Zm00001d015090_P001 | Maize | extracellular | 38.58 | 47.17 |
| PGSC0003DMT400071865 | Potato | plastid | 44.14 | 46.43 |
| KXG29351 | Sorghum | plastid | 46.3 | 40.0 |
| TraesCS6B01G114000.1 | Wheat | cytosol, nucleus, peroxisome | 46.6 | 38.62 |
| TraesCS6D01G076900.1 | Wheat | nucleus | 46.6 | 38.13 |
| TraesCS6A01G083100.1 | Wheat | cytosol, nucleus, peroxisome | 46.6 | 38.13 |
| PGSC0003DMT400000467 | Potato | nucleus | 39.51 | 37.76 |
| Os02t0125200-00 | Rice | mitochondrion | 41.67 | 36.78 |
| PGSC0003DMT400075370 | Potato | nucleus | 39.51 | 35.75 |
| PGSC0003DMT400045147 | Potato | plastid | 36.11 | 35.45 |
| PGSC0003DMT400014926 | Potato | plastid | 37.04 | 34.78 |
| PGSC0003DMT400059682 | Potato | nucleus | 33.64 | 33.44 |
| PGSC0003DMT400031843 | Potato | plastid | 36.73 | 30.99 |
| PGSC0003DMT400073848 | Potato | nucleus | 30.86 | 30.3 |
| PGSC0003DMT400052826 | Potato | nucleus | 33.64 | 30.28 |
| PGSC0003DMT400007056 | Potato | nucleus | 37.35 | 29.8 |
| PGSC0003DMT400035486 | Potato | nucleus, plastid | 23.77 | 29.5 |
| PGSC0003DMT400075372 | Potato | cytosol, nucleus, peroxisome | 29.01 | 28.83 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400032575 | EnsemblPlantsGene:PGSC0003DMG400012512 | EntrezGene:102578251 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31500 | PANTHER:PTHR31500:SF7 | PFAM:PF03479 | PFscan:PS51742 | PGSC:PGSC0003DMG400012512 | RefSeq:XP_006358365.1 |
| SEG:seg | SUPFAM:SSF117856 | UniParc:UPI000296C841 | UniProt:M1AXN3 | MapMan:35.1 | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012512]
Coordinates
chr8:+:351918..357983
Molecular Weight (calculated)
33262.7 Da
IEP (calculated)
9.860
GRAVY (calculated)
-0.105
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMSGVTVVG SDAPSDYHVA PRTTENPSQV SGSAPQIMTI APTPATGAGA GALALVKKKR GRPRKYGPDG VAVPSTAAAL SPKPISSAAP VSSPVIDFSS
101: EKRGKIRPVG LVSKPHMPKL EVENSGEWVS CSVGANFTPH IITVNTGEDV TMKIISFSQQ GPRAICILSA NGVISSVTLR QPDSSGGTLT YEGRFEILSL
201: TGSFMPSETG GMRNRSGGMS VSLASPDGRV VGGGVAGLLV AAGPVQIVVG SFLAGNQHEQ KTKKNKLEPI TAAVVPLSSP DIEEPSYNQS SAKPTMPASS
301: INWSSSLATE SRSKTADINI TLPA
101: EKRGKIRPVG LVSKPHMPKL EVENSGEWVS CSVGANFTPH IITVNTGEDV TMKIISFSQQ GPRAICILSA NGVISSVTLR QPDSSGGTLT YEGRFEILSL
201: TGSFMPSETG GMRNRSGGMS VSLASPDGRV VGGGVAGLLV AAGPVQIVVG SFLAGNQHEQ KTKKNKLEPI TAAVVPLSSP DIEEPSYNQS SAKPTMPASS
301: INWSSSLATE SRSKTADINI TLPA
001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
Arabidopsis Description
AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.