CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04337
KRH28286
KRH58200
KRH77206

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12080.1	KRH04337	AT4G17950.1	21798944
AT4G12080.1	KRH28286	AT4G17950.1	21798944
AT4G12080.1	KRH58200	AT4G17950.1	21798944
AT4G12080.1	KRH77206	AT4G17950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04046	Soybean	nucleus	95.11	93.96
VIT_02s0025g05130.t01	Wine grape	cytosol, nucleus, peroxisome	76.15	75.45
PGSC0003DMT400010017	Potato	plastid	67.58	69.28
Solyc08g079630.2.1	Tomato	nucleus	67.89	69.16
PGSC0003DMT400032575	Potato	plastid	67.28	67.9
Solyc08g007530.2.1	Tomato	nucleus	67.28	67.07
CDY04392	Canola	nucleus	49.85	60.82
Bra019359.1-P	Field mustard	nucleus	60.55	60.18
CDX94122	Canola	cytosol, nucleus, plasma membrane	60.55	60.18
CDX98767	Canola	nucleus	60.24	59.88
AT4G12080.1	Thale cress	nucleus	63.91	58.71
CDY47428	Canola	nucleus	55.35	58.58
CDY41291	Canola	nucleus	53.82	57.7
Bra013646.1-P	Field mustard	nucleus	53.82	57.7
AT4G22770.1	Thale cress	nucleus	58.41	57.19
Bra033121.1-P	Field mustard	nucleus	54.13	57.1
KRH76268	Soybean	cytosol, nucleus, plastid	59.63	56.36
KRH65263	Soybean	cytosol, nucleus, plastid	59.02	55.78
KRH00569	Soybean	cytosol, peroxisome, plastid	56.27	54.44
KRH40594	Soybean	nucleus	55.96	54.3
CDX82971	Canola	plastid	35.17	53.49
KRH34345	Soybean	nucleus	52.6	52.12
KRG92455	Soybean	nucleus	51.99	51.52
HORVU0Hr1G015180.2	Barley	cytosol, extracellular	36.7	50.85
KRH09229	Soybean	nucleus	52.91	50.29
KRH38723	Soybean	nucleus	51.68	49.13
Zm00001d015090_P001	Maize	extracellular	39.45	48.68
KRH05193	Soybean	plastid	20.18	44.9
KXG29351	Sorghum	plastid	48.62	42.4
KRH65066	Soybean	nucleus	41.28	39.71
TraesCS6B01G114000.1	Wheat	cytosol, nucleus, peroxisome	47.4	39.64
KRH40471	Soybean	nucleus	40.98	39.3
KRH48165	Soybean	nucleus	40.67	39.12
TraesCS6D01G076900.1	Wheat	nucleus	47.09	38.89
KRH00715	Soybean	nucleus	40.67	38.89
TraesCS6A01G083100.1	Wheat	cytosol, nucleus, peroxisome	46.79	38.64
Os02t0125200-00	Rice	mitochondrion	42.51	37.87
KRH20019	Soybean	nucleus	42.2	36.41
KRH77536	Soybean	nucleus	38.53	35.29
KRH27929	Soybean	nucleus	37.92	35.23
KRH32644	Soybean	plastid	40.37	33.33
KRH51558	Soybean	nucleus	35.47	32.68
KRH59866	Soybean	nucleus	34.86	32.39
KRH60876	Soybean	nucleus	34.56	31.65
KRH41165	Soybean	nucleus	33.03	30.68
KRH58200	Soybean	nucleus	33.95	30.66
KRH04337	Soybean	nucleus	31.5	28.93
KRH68809	Soybean	nucleus	30.58	28.9
KRH28286	Soybean	plastid	29.66	28.61
KRG97062	Soybean	nucleus	30.89	27.98
KRH77206	Soybean	nucleus	28.75	27.81
KRH25156	Soybean	cytosol	21.1	26.54
KRH30520	Soybean	nucleus	27.83	24.59

Protein Annotations

EMBL:ACUP02002825	EnsemblPlants:KRH57315	EnsemblPlantsGene:GLYMA_05G053800	EntrezGene:100801730	Gene3D:3.30.1330.80	InterPro:IPR005175
InterPro:PPC_dom	PANTHER:PTHR31500	PANTHER:PTHR31500:SF43	PFAM:PF03479	PFscan:PS51742	ProteinID:KRH57315
ProteinID:KRH57315.1	SEG:seg	SUPFAM:SSF117856	UniParc:UPI0002339702	UniProt:I1K0I8	MapMan:35.1

Description

hypothetical protein

Coordinates

chr5:-:4865327..4870695

Molecular Weight (calculated)

33435.6 Da

IEP (calculated)

9.423

GRAVY (calculated)

-0.132

Length

327 amino acids

Sequence
(BLAST)

001: MEASGGVSSG VTVVGSDAPS DYHVAPRTDN PAPASGSTTQ IPATAGSALS PSHPPHTAAM EAYPATMPAK KKRGRPRKYA PDGSVTMALS PKPISSSAPL
101: PPVIDFSSEK RGKIKPASSV SKAKFELENL GEWVACSVGA NFTPHIITVN SGEDVTMKVI SFSQQGPRAI CILSANGVIS SVTLRQPDSS GGTLTYEGRF
201: EILSLSGSFM PNESGGTRSR SGGMSVSLAS PDGRVVGGGV AGLLVAASPV QVVVGSFLAG NQHEQKPRKQ KHEVISSVTP AAVVPISTLD PVSILSAASS
301: IRNDNWSAMP AEAKDKPADI NVSLPAG

Best Arabidopsis Sequence Match ( AT4G12080.1 )
(BLAST)

001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT

Arabidopsis Description

AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.