CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00715
KRH04046
KRH04337
KRH28286
KRH40471
KRH48165
KRH57315
KRH58200
KRH65066
KRH77206

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45850.1	KRH04046	AT4G12080.1	21798944
AT2G45850.1	KRH57315	AT4G12080.1	21798944
AT2G45850.1	KRH04337	AT4G17950.1	21798944
AT2G45850.1	KRH28286	AT4G17950.1	21798944
AT2G45850.1	KRH58200	AT4G17950.1	21798944
AT2G45850.1	KRH77206	AT4G17950.1	21798944
AT3G61310.1	KRH00715	AT2G45850.1	21798944
AT3G61310.1	KRH40471	AT2G45850.1	21798944
AT3G61310.1	KRH48165	AT2G45850.1	21798944
AT3G61310.1	KRH65066	AT2G45850.1	21798944
AT3G61310.1	KRH00715	AT3G61310.1	21798944
AT3G61310.1	KRH40471	AT3G61310.1	21798944
AT3G61310.1	KRH48165	AT3G61310.1	21798944
AT3G61310.1	KRH65066	AT3G61310.1	21798944
AT3G61310.1	KRH04046	AT4G12080.1	21798944
AT3G61310.1	KRH57315	AT4G12080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48165	Soybean	nucleus	95.59	95.59
KRH40471	Soybean	nucleus	83.82	83.58
KRH00715	Soybean	nucleus	82.94	82.46
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	72.06	71.01
PGSC0003DMT400000467	Potato	nucleus	61.47	61.65
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	60.29	61.56
Solyc01g094460.2.1	Tomato	nucleus	60.88	61.06
KRH05193	Soybean	plastid	24.12	55.78
GSMUA_Achr8P11400_001	Banana	nucleus	56.76	55.78
GSMUA_Achr11P...	Banana	nucleus	58.82	53.91
CDY42495	Canola	nucleus	53.24	53.55
CDY48928	Canola	nucleus	54.12	53.49
Bra014444.1-P	Field mustard	nucleus	52.35	53.45
Bra007595.1-P	Field mustard	nucleus	53.53	53.37
CDX89109	Canola	nucleus	52.35	53.13
CDX71746	Canola	nucleus	53.24	52.62
AT2G45850.1	Thale cress	nucleus	53.82	52.59
GSMUA_Achr11P...	Banana	nucleus	57.94	52.53
CDY37070	Canola	nucleus	52.65	52.49
Bra039309.1-P	Field mustard	nucleus	52.65	52.49
AT3G61310.1	Thale cress	nucleus, plastid	54.41	52.26
CDY27354	Canola	nucleus	53.53	52.15
CDY58791	Canola	nucleus	50.0	51.83
CDY51561	Canola	nucleus	50.88	50.88
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	29.12	50.51
Bra003446.1-P	Field mustard	nucleus	48.24	48.38
KRH27929	Soybean	nucleus	47.94	46.31
KRH59866	Soybean	nucleus	47.35	45.74
GSMUA_Achr4P30000_001	Banana	nucleus	43.53	45.4
KRH77536	Soybean	nucleus	47.65	45.38
KRH41165	Soybean	nucleus	46.47	44.89
HORVU2Hr1G123730.3	Barley	plastid	26.18	42.38
TraesCS7A01G565900.1	Wheat	nucleus	37.65	41.69
KRH57315	Soybean	nucleus	39.71	41.28
KRH04046	Soybean	nucleus	40.0	41.09
Zm00001d018515_P002	Maize	nucleus	45.88	40.21
KRH76268	Soybean	cytosol, nucleus, plastid	40.59	39.88
KRH65263	Soybean	cytosol, nucleus, plastid	40.0	39.31
OQU85994	Sorghum	nucleus	45.88	38.9
Os02t0824300-01	Rice	nucleus	44.71	38.58
KRH34345	Soybean	nucleus	37.06	38.18
KRH00569	Soybean	cytosol, peroxisome, plastid	37.65	37.87
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	44.41	37.75
KRG92455	Soybean	nucleus	35.88	36.97
KRH40594	Soybean	nucleus	36.47	36.8
KRH51558	Soybean	nucleus	37.65	36.06
KRH09229	Soybean	nucleus	35.59	35.17
KRH38723	Soybean	nucleus	35.0	34.59
KRH60876	Soybean	nucleus	36.18	34.45
KRH58200	Soybean	nucleus	36.18	33.98
KRH20019	Soybean	nucleus	37.65	33.77
KRH04337	Soybean	nucleus	34.12	32.58
KRH28286	Soybean	plastid	32.35	32.45
TraesCS2A01G582300.1	Wheat	nucleus	38.53	32.43
Zm00001d026652_P001	Maize	plastid	37.65	32.24
TraesCS6B01G447600.1	Wheat	nucleus	44.41	32.06
KRH68809	Soybean	nucleus	32.35	31.79
KRH77206	Soybean	nucleus	31.47	31.66
TraesCS2B01G604700.1	Wheat	nucleus	37.35	31.51
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	37.35	31.36
KRG97062	Soybean	nucleus	32.94	31.02
KRH32644	Soybean	plastid	35.88	30.81
KXG27470	Sorghum	nucleus	37.65	30.62
Os04t0683900-01	Rice	nucleus	37.06	30.07
HORVU7Hr1G122340.3	Barley	nucleus	30.29	29.51
TraesCS6A01G403700.1	Wheat	nucleus	45.59	29.19
Zm00001d001784_P002	Maize	nucleus	36.47	28.51
KRH25156	Soybean	cytosol	21.18	27.69
KRH30520	Soybean	nucleus	28.82	26.49

Protein Annotations

EntrezGene:100783475	Gene3D:3.30.1330.80	MapMan:35.1	EMBL:ACUP02001308	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:GLYMA_03G011200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	UniProt:I1JKA0	InterPro:IPR005175
EnsemblPlants:KRH65066	ProteinID:KRH65066	ProteinID:KRH65066.1	ProteinID:KRH65067.1	ProteinID:KRH65068.1	ProteinID:KRH65069.1
ProteinID:KRH65070.1	PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF44
SMART:SM00384	SUPFAM:SSF117856	UniParc:UPI00023398F8	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:1079855..1087560

Molecular Weight (calculated)

34660.3 Da

IEP (calculated)

10.176

GRAVY (calculated)

-0.221

Length

340 amino acids

Sequence
(BLAST)

001: MDRGDQMTLP GSASYYMQRG IPGAGNQPVL HNSPNIGPLS NPNLPCQSSI GGGGTIGSTL PLESSGISAP CVNVSAPSGT LPGETVKRKR GRPRKYGSDG
101: AVSLALTPTP ASHPGALAQG QKRGRGRPPG SGKKQQLASL GELMSGSAGM GFTPHIITIA VGEDIATKIM SFSQQGPRAI CILSANGAVS TVTLRQPSTS
201: GGTVTYEGRF EIVCLSGSYL VADSGGSRNR TGGLSVSLAS PDGRVVGGGV GGVLIAASPV QVILGSFSWG ASKTKIKKKE GSEGAEVALE TDHQTVHNPV
301: AVNSISPNQN LTPTSSLSPW PASRSLDMRN SHIDIDLMRG

Best Arabidopsis Sequence Match ( AT3G61310.1 )
(BLAST)

001: MDRRDAMALS GSGSYYIQRG IPGSGPPPPQ TQPTFHGSQG FHHFTNSISP FGSNPNPNPN PGGVSTGFVS PPLPVDSSPA DSSAAAAGAL VAPPSGDTSV
101: KRKRGRPRKY GQDGGSVSLA LSPSISNVSP NSNKRGRGRP PGSGKKQRLS SIGEMMPSST GMSFTPHVIV VSIGEDIASK VISFSHQGPR AICVLSASGA
201: VSTATLLQPA PSHGTIIYEG LFELISLSTS YLNTTDNDYP NRTGSLAVSL ASPDGRVIGG GIGGPLIAAS QVQVIVGSFI WAIPKGKIKK REETSEDVQD
301: TDALENNNDN TAATSPPVPQ QSQNIVQTPV GIWSTGSRSM DMHHPHMDID LMRG

Arabidopsis Description

AHL11AT-hook motif nuclear-localized protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7L5]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.