Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89109 | Canola | nucleus | 94.08 | 94.93 |
| CDY48928 | Canola | nucleus | 84.91 | 83.43 |
| CDX71746 | Canola | nucleus | 84.02 | 82.56 |
| AT3G61310.1 | Thale cress | nucleus, plastid | 82.25 | 78.53 |
| CDY58791 | Canola | nucleus | 74.56 | 76.83 |
| CDY51561 | Canola | nucleus | 76.92 | 76.47 |
| CDY37070 | Canola | nucleus | 67.46 | 66.86 |
| CDY27354 | Canola | nucleus | 68.64 | 66.48 |
| KRH65066 | Soybean | nucleus | 53.55 | 53.24 |
| KRH48165 | Soybean | nucleus | 52.66 | 52.35 |
| KRH40471 | Soybean | nucleus | 52.66 | 52.2 |
| KRH00715 | Soybean | nucleus | 52.37 | 51.75 |
| VIT_15s0046g02930.t01 | Wine grape | nucleus, plastid | 52.66 | 51.59 |
| GSMUA_Achr5P20630_001 | Banana | nucleus, plasma membrane, plastid | 47.04 | 47.75 |
| PGSC0003DMT400000467 | Potato | nucleus | 46.15 | 46.02 |
| Solyc01g094460.2.1 | Tomato | nucleus | 45.86 | 45.72 |
| GSMUA_Achr8P11400_001 | Banana | nucleus | 45.56 | 44.51 |
| GSMUA_Achr11P... | Banana | nucleus | 46.75 | 42.59 |
| GSMUA_Achr1P03070_001 | Banana | cytosol, extracellular, nucleus | 24.56 | 42.35 |
| GSMUA_Achr11P... | Banana | nucleus | 46.45 | 41.87 |
| CDY25500 | Canola | nucleus | 43.79 | 40.0 |
| CDY45364 | Canola | nucleus | 42.6 | 39.24 |
| HORVU2Hr1G123730.3 | Barley | plastid | 24.26 | 39.05 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 41.72 | 38.95 |
| CDY34355 | Canola | nucleus | 43.49 | 38.89 |
| TraesCS7A01G565900.1 | Wheat | nucleus | 34.91 | 38.44 |
| GSMUA_Achr4P30000_001 | Banana | nucleus | 36.98 | 38.34 |
| CDX84679 | Canola | nucleus | 29.29 | 37.79 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 29.29 | 37.79 |
| Zm00001d018515_P002 | Maize | nucleus | 41.12 | 35.82 |
| OQU85994 | Sorghum | nucleus | 41.72 | 35.16 |
| Os02t0824300-01 | Rice | nucleus | 40.53 | 34.77 |
| CDY46385 | Canola | nucleus | 39.05 | 34.55 |
| CDY39751 | Canola | nucleus | 39.05 | 34.55 |
| Zm00001d051861_P001 | Maize | endoplasmic reticulum, nucleus, plastid | 40.24 | 34.0 |
| CDY01503 | Canola | cytosol | 25.15 | 32.82 |
| CDX82971 | Canola | plastid | 20.71 | 32.56 |
| CDX98767 | Canola | nucleus | 31.66 | 32.52 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 31.36 | 32.22 |
| CDY07239 | Canola | plasma membrane | 21.89 | 32.03 |
| CDY41028 | Canola | nucleus, plastid | 23.08 | 31.45 |
| CDY04392 | Canola | nucleus | 24.56 | 30.97 |
| CDY47428 | Canola | nucleus | 28.11 | 30.74 |
| CDY07238 | Canola | nucleus | 28.7 | 30.7 |
| CDY41291 | Canola | nucleus | 27.51 | 30.49 |
| CDY26692 | Canola | nucleus | 26.92 | 30.03 |
| Zm00001d026652_P001 | Maize | plastid | 35.21 | 29.97 |
| CDY26694 | Canola | cytosol, plastid | 22.78 | 29.39 |
| CDY26693 | Canola | plastid | 23.37 | 29.26 |
| TraesCS2A01G582300.1 | Wheat | nucleus | 34.91 | 29.21 |
| CDY03203 | Canola | nucleus | 30.77 | 29.05 |
| TraesCS2B01G604700.1 | Wheat | nucleus | 34.32 | 28.78 |
| TraesCS6B01G447600.1 | Wheat | nucleus | 39.94 | 28.66 |
| CDY68252 | Canola | nucleus | 25.15 | 28.62 |
| CDY35172 | Canola | nucleus | 29.88 | 28.61 |
| CDY41027 | Canola | cytosol | 22.49 | 28.57 |
| KXG27470 | Sorghum | nucleus | 35.21 | 28.47 |
| Os04t0683900-01 | Rice | nucleus | 35.21 | 28.4 |
| TraesCS2D01G597900.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 34.02 | 28.4 |
| CDX78814 | Canola | nucleus | 33.14 | 27.52 |
| CDY08882 | Canola | nucleus | 35.21 | 27.36 |
| CDX76549 | Canola | nucleus | 35.21 | 27.05 |
| CDY26691 | Canola | cytosol, plastid | 24.85 | 27.01 |
| HORVU7Hr1G122340.3 | Barley | nucleus | 27.81 | 26.93 |
| TraesCS6A01G403700.1 | Wheat | nucleus | 42.01 | 26.74 |
| CDY21122 | Canola | nucleus | 30.47 | 26.68 |
| Zm00001d001784_P002 | Maize | nucleus | 34.32 | 26.67 |
| CDY44500 | Canola | nucleus | 33.14 | 26.67 |
| CDY01506 | Canola | nucleus | 23.67 | 26.58 |
| CDY30005 | Canola | nucleus | 29.88 | 26.51 |
| CDY37704 | Canola | nucleus | 29.29 | 26.4 |
| CDY52506 | Canola | nucleus | 27.22 | 26.36 |
| CDX94457 | Canola | nucleus | 29.29 | 26.19 |
| CDY05594 | Canola | nucleus | 27.22 | 25.84 |
| CDX89422 | Canola | nucleus | 29.29 | 25.78 |
| CDX92693 | Canola | nucleus | 29.88 | 25.51 |
| CDY49703 | Canola | nucleus | 29.88 | 25.31 |
| CDY38874 | Canola | nucleus | 31.66 | 25.3 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 29.59 | 25.13 |
| CDY32624 | Canola | nucleus | 31.07 | 24.76 |
| CDY16785 | Canola | nucleus | 28.7 | 24.74 |
| CDY00488 | Canola | nucleus | 31.36 | 24.71 |
| CDY65097 | Canola | nucleus | 30.18 | 24.34 |
| CDX87241 | Canola | nucleus | 28.11 | 24.3 |
| CDY52477 | Canola | nucleus | 26.33 | 24.18 |
| CDY65362 | Canola | nucleus | 26.33 | 23.92 |
| CDX99902 | Canola | nucleus | 31.07 | 23.92 |
| CDX91598 | Canola | nucleus | 29.59 | 23.87 |
| CDY00271 | Canola | nucleus | 27.81 | 23.33 |
| CDX86910 | Canola | nucleus | 27.51 | 23.31 |
| CDY30710 | Canola | nucleus | 26.63 | 22.44 |
| CDY13231 | Canola | nucleus | 25.15 | 20.73 |
Protein Annotations
| EnsemblPlants:CDY42495 | EnsemblPlantsGene:GSBRNA2T00074932001 | Gene3D:3.30.1330.80 | GO:A0A078HVI1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:AT_hook_DNA-bd_motif | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF44 | PFAM:PF03479 | PFscan:PS51742 | ProteinID:CDY42495 | ProteinID:CDY42495.1 | SEG:seg |
| SMART:SM00384 | SUPFAM:SSF117856 | UniParc:UPI0004EEFB6B | UniProt:A0A078HVI1 | MapMan:35.1 | : |
Description
BnaC04g21860DBnaC04g21860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVI1]
Coordinates
chrLK032526:-:188636..190271
Molecular Weight (calculated)
35603.1 Da
IEP (calculated)
9.755
GRAVY (calculated)
-0.406
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRREAMGSY YIQRGMPGSG PPPPPQTQQP FHGSQGFHHF SNPNYQNQGG GSTGFVSPPL QMESSPVDSS AVAAPPPTSG ETSLKRKRGR PRKYGQDGSV
101: SLALSPSVGS SMSPNSNKRG RGRPPGSGKK QRLASIGDLM MPSSSGMSFT PHVIVVSVGE DIASKVLSFS QQGPRAICVL SVIGAVSTAT LIQPAPSHGA
201: IIYEGRFELV SLSLSYLNST DNDYSNRTGN LAVSLASPDG RVIGGGIGGP LIAASHVQVI VGSFLWAVPK RKVKKRDETT SEDVQDTDAL ENNDSTAAPV
301: SPPVPQNLVQ TPVGMWSTGS RSSMDMHHAH MDIDLMRG
101: SLALSPSVGS SMSPNSNKRG RGRPPGSGKK QRLASIGDLM MPSSSGMSFT PHVIVVSVGE DIASKVLSFS QQGPRAICVL SVIGAVSTAT LIQPAPSHGA
201: IIYEGRFELV SLSLSYLNST DNDYSNRTGN LAVSLASPDG RVIGGGIGGP LIAASHVQVI VGSFLWAVPK RKVKKRDETT SEDVQDTDAL ENNDSTAAPV
301: SPPVPQNLVQ TPVGMWSTGS RSSMDMHHAH MDIDLMRG
001: MDRRDAMALS GSGSYYIQRG IPGSGPPPPQ TQPTFHGSQG FHHFTNSISP FGSNPNPNPN PGGVSTGFVS PPLPVDSSPA DSSAAAAGAL VAPPSGDTSV
101: KRKRGRPRKY GQDGGSVSLA LSPSISNVSP NSNKRGRGRP PGSGKKQRLS SIGEMMPSST GMSFTPHVIV VSIGEDIASK VISFSHQGPR AICVLSASGA
201: VSTATLLQPA PSHGTIIYEG LFELISLSTS YLNTTDNDYP NRTGSLAVSL ASPDGRVIGG GIGGPLIAAS QVQVIVGSFI WAIPKGKIKK REETSEDVQD
301: TDALENNNDN TAATSPPVPQ QSQNIVQTPV GIWSTGSRSM DMHHPHMDID LMRG
101: KRKRGRPRKY GQDGGSVSLA LSPSISNVSP NSNKRGRGRP PGSGKKQRLS SIGEMMPSST GMSFTPHVIV VSIGEDIASK VISFSHQGPR AICVLSASGA
201: VSTATLLQPA PSHGTIIYEG LFELISLSTS YLNTTDNDYP NRTGSLAVSL ASPDGRVIGG GIGGPLIAAS QVQVIVGSFI WAIPKGKIKK REETSEDVQD
301: TDALENNNDN TAATSPPVPQ QSQNIVQTPV GIWSTGSRSM DMHHPHMDID LMRG
Arabidopsis Description
AHL11AT-hook motif nuclear-localized protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7L5]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.