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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70996
CDX72382
CDX79848
CDX79851
CDX88802
CDX92367
CDX92489
CDX97722
CDY02749
CDY03143
CDY03145
CDY04768
CDY05264
CDY12037
CDY12039
CDY13510
CDY15651
CDY21400
CDY24692
CDY24919
CDY25761
CDY25892
CDY30135
CDY31293
CDY33994
CDY35839
CDY42317
CDY44954
CDY46888
CDY49730
CDY50821
CDY57865
CDY58843
CDY67997

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G52240.1 CDY04768 AT1G22920.1 21798944
AT1G52240.1 CDY21400 AT1G22920.1 21798944
AT1G52240.1 CDY25761 AT1G22920.1 21798944
AT1G52240.1 CDY03145 AT1G34430.1 21798944
AT1G52240.1 CDY12039 AT1G34430.1 21798944
AT1G52240.1 CDY03143 AT1G34570.1 21798944
AT1G52240.1 CDY12037 AT1G34570.1 21798944
AT1G52240.1 CDX79848 AT2G42790.1 21798944
AT1G52240.1 CDX79851 AT2G42790.1 21798944
AT1G52240.1 CDY15651 AT2G42790.1 21798944
AT1G52240.1 CDY50821 AT2G42790.1 21798944
AT1G52240.1 CDY05264 AT3G06430.1 21798944
AT1G52240.1 CDY24692 AT3G06430.1 21798944
AT1G52240.1 CDX97722 AT3G16120.1 21798944
AT1G52240.1 CDY30135 AT3G16120.1 21798944
AT1G52240.1 CDY46888 AT3G17668.1 21798944
AT1G52240.1 CDY24919 AT4G15930.1 21798944
AT1G52240.1 CDY57865 AT4G15930.1 21798944
AT1G52240.1 CDX72382 AT4G32960.1 21798944
AT1G52240.1 CDY13510 AT4G32960.1 21798944
AT1G52240.1 CDX92489 AT5G19920.1 21798944
AT1G52240.1 CDY35839 AT5G19920.1 21798944
AT1G52240.1 CDY42317 AT5G19920.1 21798944
AT1G52240.1 CDY44954 AT5G19920.1 21798944
AT1G52240.1 CDX70996 AT5G22310.1 21798944
AT1G52240.1 CDX88802 AT5G22310.1 21798944
AT1G52240.1 CDX92367 AT5G22310.1 21798944
AT1G52240.1 CDY67997 AT5G22310.1 21798944
AT1G52240.1 CDY02749 AT5G57660.1 21798944
AT1G52240.1 CDY25892 AT5G57660.1 21798944
AT1G52240.1 CDY49730 AT5G57660.1 21798944
AT1G52240.1 CDY58843 AT5G57660.1 21798944
AT1G52240.1 CDY31293 AT5G64960.1 21798944
AT1G52240.1 CDY33994 AT5G64960.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra030396.1-P Field mustard nucleus 100.0 97.39
CDX87879 Canola nucleus 99.81 93.72
AT1G52240.1 Thale cress nucleus 89.29 86.0
CDY67259 Canola nucleus 88.91 77.37
CDY52982 Canola nucleus 88.53 77.04
CDX67930 Canola nucleus 59.66 64.07
CDX97723 Canola nucleus 62.33 61.28
CDY30136 Canola nucleus 63.1 60.0
CDX79407 Canola cytosol, endoplasmic reticulum, nucleus 59.66 58.1
CDY28381 Canola nucleus 62.72 54.76
CDY20181 Canola nucleus 62.72 54.04
Zm00001d012691_P001 Maize cytosol, extracellular, mitochondrion, plastid 29.64 54.01
HORVU3Hr1G073200.1 Barley nucleus 48.95 53.78
CDY03296 Canola nucleus 34.03 53.78
CDY46477 Canola nucleus 53.54 53.74
TraesCS3D01G296400.1 Wheat cytosol 47.42 53.68
TraesCS3B01G331000.1 Wheat nucleus 47.61 53.55
CDX77402 Canola nucleus 53.15 53.36
CDY03297 Canola mitochondrion 52.39 52.39
CDY39783 Canola mitochondrion 52.2 52.0
TraesCS3A01G305500.1 Wheat cytosol, mitochondrion, nucleus, plastid 46.65 51.91
Os01t0760300-01 Rice plasma membrane 51.05 51.25
CDY44926 Canola nucleus 47.61 50.4
CDX88884 Canola cytosol, plastid 46.85 50.2
CDY42277 Canola nucleus 47.42 50.2
TraesCS3D01G270200.1 Wheat plastid 49.52 50.0
TraesCS3B01G304200.1 Wheat plastid 49.33 50.0
OQU87589 Sorghum nucleus 49.33 49.9
Zm00001d043383_P001 Maize nucleus 49.71 49.71
CDY58963 Canola cytosol 34.99 49.19
CDX70882 Canola cytosol 47.04 48.71
CDX92519 Canola plastid 45.89 48.29
Zm00001d038989_P002 Maize nucleus, plastid 47.04 48.24
KXG33101 Sorghum mitochondrion 50.29 47.05
EES19937 Sorghum mitochondrion 49.33 46.91
Os05t0560100-01 Rice mitochondrion 50.67 46.57
Os01t0675000-01 Rice mitochondrion 49.33 46.57
TraesCS1B01G420200.1 Wheat nucleus, plastid 50.1 46.37
TraesCS1D01G400200.2 Wheat plastid 49.9 46.19
TraesCS1A01G392100.1 Wheat plastid 49.52 46.17
Zm00001d009549_P002 Maize mitochondrion 47.23 44.75
CDY57376 Canola cytosol, extracellular, nucleus 6.12 42.67
Zm00001d043889_P001 Maize mitochondrion 48.76 42.15
HORVU3Hr1G062030.1 Barley nucleus, plastid 49.33 41.55
TraesCS3A01G270400.1 Wheat plastid 49.71 41.34
CDX93028 Canola nucleus 36.33 40.08
CDX74772 Canola nucleus, plastid 34.23 39.78
CDY18892 Canola nucleus 34.23 39.6
CDY51157 Canola nucleus 34.23 39.34
CDY69871 Canola cytosol 8.41 39.29
CDY07216 Canola cytosol 35.56 39.16
CDY70620 Canola nucleus 34.99 39.02
HORVU1Hr1G086590.2 Barley plastid 48.76 37.83
CDX77457 Canola cytosol 39.2 37.48
CDX85176 Canola cytosol 39.2 37.48
CDY40325 Canola nucleus 39.77 37.14
CDY10476 Canola nucleus 39.77 37.14
CDY41197 Canola cytosol, plastid 36.71 34.66
CDY40246 Canola cytosol, plastid 36.71 34.47
CDY12411 Canola cytosol 8.41 34.11
CDX70109 Canola cytosol 40.34 33.33
CDX98888 Canola cytosol 40.34 33.07
CDY31706 Canola cytosol 29.45 30.62
CDX84189 Canola cytosol 28.68 30.55
CDY12303 Canola nucleus 31.17 28.95
CDY62299 Canola cytosol, nucleus, plastid 30.98 28.93
CDX91908 Canola cytosol 35.18 28.09
Protein Annotations
Gene3D:1.20.58.2010MapMan:27.4.3.1GO:A0A078I916UniProt:A0A078I916EnsemblPlants:CDY45633ProteinID:CDY45633
ProteinID:CDY45633.1GO:GO:0003674GO:GO:0005085GO:GO:0005089GO:GO:0005488GO:GO:0005515
GO:GO:0008150GO:GO:0065009EnsemblPlantsGene:GSBRNA2T00082376001InterPro:IPR005512PFAM:PF03759InterPro:PRONE_dom
PFscan:PS51334PANTHER:PTHR33101PANTHER:PTHR33101:SF10InterPro:RopGEFUniParc:UPI0004EF3FCASEG:seg
Description
BnaA05g15000DBnaA05g15000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I916]
Coordinates
chrLK032631:+:18919..20923
Molecular Weight (calculated)
58884.0 Da
IEP (calculated)
5.649
GRAVY (calculated)
-0.595
Length
523 amino acids
Sequence
(BLAST)
001: MEQEQESYKS RLFHFKNMSE HSASRHVKSW SSDCAMKIDG SDSFDDDDND LMFRSQPGNF GSVERPPLPS SGDATPNRSD KIGTPRMVSS ESMEAQLQAA
101: MEQMKERFSK LLLGEDMSGG GKGVSSALAL SNAITNLAAS AFGEQRRLEP MPADRKARWR RELGWLISVA DHIVEFAPTQ QTNKDGSSME VMTTRQRTDL
201: LCNVPALKKL DAMLLDCLDK FKDQNEFYYV KKDSPDSSET RNDEKWWLPA VKVPPNGLSE MSRRFLQSQK ECVNQVLKAA MAINAQVLSE MEIPESYLES
301: LPKNGRASLG DVIYKMITVE MFDADQFLIE MDLSSEHKIL DLKNKIEASI VIWKRKMVQK DTKSPWGSGV STEKREQFEE RAETILLLLK QGFPGISQSS
401: LDISKIQCNR DVGLAILEGY SRVLESLAHT VMSKIEDVLY ADQLTQEPTN APSKNRYLDT ATGTSLSDVM QWGNKNNEVK KESYYGDREK PLLSKVTGLM
501: TTNKKSSYLE TIGVMRSPTA RYS
Best Arabidopsis Sequence Match ( AT1G52240.1 )
(BLAST)
001: MVKAMEQEQE TYKSRLFHFK NMNENSASRH VKSWSSDCAM RMDGSDNLDD DDNDMMMFRS QPGKCGSVDR PSLPIGGVTP NRNDKLPRVS SSDSMEALII
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS
Arabidopsis Description
ROPGEF11ROPGEF11 [Source:UniProtKB/TrEMBL;Acc:A0A178W8V0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.