CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73732
CDX77994
CDX90652
CDX97807
CDY00332
CDY10748
CDY23989
CDY29012
CDY29659
CDY30738
CDY33284
CDY45748
CDY47131
CDY56740
CDY59407
CDY59617
CDY68200

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38430.1	CDX97807	AT2G30580.1	21798944
AT4G38430.1	CDY10748	AT2G30580.1	21798944
AT4G38430.1	CDY23989	AT2G30580.1	21798944
AT4G38430.1	CDY29659	AT2G30580.1	21798944
AT4G38430.1	CDY47131	AT2G30580.1	21798944
AT4G38430.1	CDX73732	AT3G51300.1	21798944
AT4G38430.1	CDX77994	AT3G51300.1	21798944
AT4G38430.1	CDX90652	AT3G51300.1	21798944
AT4G38430.1	CDY29012	AT3G51300.1	21798944
AT4G38430.1	CDY33284	AT3G51300.1	21798944
AT4G38430.1	CDY59407	AT3G51300.1	21798944
AT4G38430.1	CDY59617	AT3G51300.1	21798944
AT4G38430.1	CDY00332	AT5G62880.1	22500990
AT4G38430.1	CDY30738	AT5G62880.1	22500990
AT4G38430.1	CDY45748	AT5G62880.1	22500990
AT4G38430.1	CDY56740	AT5G62880.1	22500990
AT4G38430.1	CDY68200	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77457	Canola	cytosol	98.9	98.9
AT4G38430.1	Thale cress	nucleus	86.11	85.95
KRH29101	Soybean	cytosol, plastid	68.74	66.43
KRH24128	Soybean	cytosol	68.37	65.85
Solyc01g111930.2.1	Tomato	nucleus	69.1	65.51
PGSC0003DMT400047997	Potato	nucleus	69.1	65.51
VIT_03s0038g03620.t01	Wine grape	cytosol	70.02	65.25
TraesCS5A01G340900.1	Wheat	cytosol	56.86	65.06
TraesCS5D01G346100.1	Wheat	cytosol	57.22	64.67
TraesCS5B01G339200.1	Wheat	cytosol	57.04	64.6
GSMUA_Achr3P14650_001	Banana	nucleus	66.0	63.56
Zm00001d006269_P001	Maize	cytosol	43.88	62.5
EER99291	Sorghum	nucleus, plastid	63.25	61.9
GSMUA_Achr10P...	Banana	cytosol	58.5	61.78
GSMUA_Achr1P18140_001	Banana	nucleus	62.34	61.66
Os09t0544800-01	Rice	nucleus	63.07	61.5
HORVU5Hr1G085510.1	Barley	nucleus, plastid	63.25	61.13
Zm00001d021464_P002	Maize	nucleus, plastid	62.52	59.27
GSMUA_Achr2P03580_001	Banana	nucleus	53.38	57.59
CDY57376	Canola	cytosol, extracellular, nucleus	7.13	52.0
CDX74772	Canola	nucleus, plastid	38.39	46.67
CDY07216	Canola	cytosol	40.04	46.11
CDY10476	Canola	nucleus	47.17	46.07
CDY70620	Canola	nucleus	39.49	46.06
CDY18892	Canola	nucleus	38.03	46.02
CDY40325	Canola	nucleus	46.98	45.89
CDY51157	Canola	nucleus	38.03	45.71
CDY69871	Canola	cytosol	9.14	44.64
CDY41197	Canola	cytosol, plastid	41.86	41.34
CDY40246	Canola	cytosol, plastid	41.86	41.11
CDX70109	Canola	cytosol	45.89	39.65
CDX98888	Canola	cytosol	45.89	39.34
CDX67930	Canola	nucleus	34.92	39.22
CDY45633	Canola	nucleus	37.48	39.2
CDY03297	Canola	mitochondrion	37.11	38.81
CDY39783	Canola	mitochondrion	37.11	38.67
CDY46477	Canola	nucleus	36.75	38.58
CDX77402	Canola	nucleus	36.56	38.39
CDY42277	Canola	nucleus	34.0	37.65
CDY44926	Canola	nucleus	34.0	37.65
CDX92519	Canola	plastid	34.19	37.63
CDX88884	Canola	cytosol, plastid	33.46	37.5
CDY03296	Canola	nucleus	22.67	37.46
CDX87879	Canola	nucleus	37.66	36.98
CDX79407	Canola	cytosol, endoplasmic reticulum, nucleus	36.01	36.69
CDX70882	Canola	cytosol	33.46	36.24
CDX97723	Canola	nucleus	34.92	35.9
CDY58963	Canola	cytosol	24.31	35.75
CDY30136	Canola	nucleus	35.83	35.64
CDY12411	Canola	cytosol	8.23	34.88
CDY52982	Canola	nucleus	37.66	34.28
CDY67259	Canola	nucleus	37.29	33.94
CDX84189	Canola	cytosol	29.98	33.4
CDY31706	Canola	cytosol	30.35	33.0
CDX91908	Canola	cytosol	39.49	32.98
CDY28381	Canola	nucleus	34.55	31.55
CDY20181	Canola	nucleus	34.73	31.3
CDY62299	Canola	cytosol, nucleus, plastid	29.98	29.29
CDY12303	Canola	nucleus	29.8	28.95
CDX93028	Canola	nucleus	22.85	26.37

Protein Annotations

EnsemblPlants:CDX85176	EnsemblPlantsGene:GSBRNA2T00142778001	Gene3D:1.20.58.2010	GO:A0A078D792	GO:GO:0003674	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101
PANTHER:PTHR33101:SF6	PFAM:PF03759	PFscan:PS51334	ProteinID:CDX85176	ProteinID:CDX85176.1	SEG:seg
UniParc:UPI0004EDD831	MapMan:27.4.3.1	:	:	:	:

Description

BnaC07g07300D

Coordinates

chrLK031840:+:1778004..1780267

Molecular Weight (calculated)

60590.9 Da

IEP (calculated)

5.887

GRAVY (calculated)

-0.453

Length

547 amino acids

Sequence
(BLAST)

001: MASLSSEEDE ECSSERCGSY SPSADVSCQS ESSSSFFGET SSPRRFYFPA PVMLPVIGGK DVVWDDKSEK QGSDLSEIEM MKERFAKLLL GEDMSGGGKG
101: VCTALAISNA ITNLSATVFG ELWRLEPLAP QKKAMWRREL EWLLCVCDSI VELIPSTQQF PGGGGTYEIM ETRPRSDLYA NLPALKKLDA MLIDMLDGFS
201: DTEFWYTDRG IGLGDCEKES FDSPASRGGG GGRPSFRQEE KWWLPCPKVP PNGLWEETRK KLQQCRDFAN QILKAALAIN AGVLAEMEIP DPYLETLPKS
301: GKECLGEIIH QYLTANKFSP ECLLDCIDLS SEHQTLEIAN RIEAAVHVWR QKKKGRKHKN QGKLKLTSWS GKVKGLVNDS ERNEFLAQRA ETLLQSLRIR
401: FPGLPQTTLD MNKIQYNRDV GHGVLESYSR VLESMAFNVT ARIDDVLYVD DAMRRSVSAT ESPALFSIGG LNGRPAAQKP FSAQSSPYGS PFATPSLSIA
501: SRSPRRAPLL YRSGTREKGV LGESEKAWSY AGNLSSRRVT GVTPERD

Best Arabidopsis Sequence Match ( AT4G38430.1 )
(BLAST)

001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD

Arabidopsis Description

ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.