Factsheet for GSMUA_Achr1P18140_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P17750_001
GSMUA_Achr5P03230_001
GSMUA_Achr6P36120_001
GSMUA_Achr9P10710_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38430.1	GSMUA_Achr4P17750_001	AT2G30580.1	21798944
AT4G38430.1	GSMUA_Achr5P03230_001	AT2G30580.1	21798944
AT4G38430.1	GSMUA_Achr9P10710_001	AT2G30580.1	21798944
AT4G38430.1	GSMUA_Achr6P36120_001	AT3G48040.1	21798944
AT4G38430.1	GSMUA_Achr6P36120_001	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P14650_001	Banana	nucleus	83.18	80.99
GSMUA_Achr10P...	Banana	cytosol	69.8	74.52
TraesCS5A01G340900.1	Wheat	cytosol	62.21	71.97
TraesCS5B01G339200.1	Wheat	cytosol	62.57	71.64
TraesCS5D01G346100.1	Wheat	cytosol	62.21	71.07
Zm00001d006269_P001	Maize	cytosol	49.19	70.83
EER99291	Sorghum	nucleus, plastid	70.89	70.13
Os09t0544800-01	Rice	nucleus	70.16	69.16
Zm00001d021464_P002	Maize	nucleus, plastid	69.98	67.07
Solyc01g111930.2.1	Tomato	nucleus	69.98	67.07
VIT_03s0038g03620.t01	Wine grape	cytosol	71.07	66.95
PGSC0003DMT400047997	Potato	nucleus	69.62	66.72
HORVU5Hr1G085510.1	Barley	nucleus, plastid	67.81	66.25
KRH29101	Soybean	cytosol, plastid	66.73	65.19
KRH24128	Soybean	cytosol	66.55	64.79
GSMUA_Achr2P03580_001	Banana	nucleus	59.31	64.69
AT4G38430.1	Thale cress	nucleus	63.65	64.23
CDX77457	Canola	cytosol	61.84	62.52
Bra015010.1-P	Field mustard	cytosol	61.66	62.34
CDX85176	Canola	cytosol	61.66	62.34
VIT_18s0001g00550.t01	Wine grape	cytosol	56.96	59.21
Solyc04g082110.2.1	Tomato	nucleus	47.02	57.65
PGSC0003DMT400025800	Potato	nucleus	54.25	54.64
GSMUA_Achr9P03750_001	Banana	cytosol	44.12	52.36
GSMUA_Achr2P09130_001	Banana	cytosol	34.36	48.59
GSMUA_Achr5P20570_001	Banana	nucleus	41.41	47.51
GSMUA_Achr5P06900_001	Banana	cytosol	35.62	46.79
GSMUA_Achr6P14020_001	Banana	cytosol	36.35	46.64
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	34.0	43.62
GSMUA_Achr3P03410_001	Banana	nucleus	37.61	41.11
GSMUA_Achr3P15410_001	Banana	nucleus	35.44	39.52
GSMUA_Achr8P14490_001	Banana	cytosol	13.56	39.06
GSMUA_Achr8P14480_001	Banana	nucleus	17.9	38.22
GSMUA_Achr11P...	Banana	cytosol	20.98	34.73
GSMUA_Achr11P...	Banana	cytosol	8.86	26.92
GSMUA_Achr6P14950_001	Banana	mitochondrion	41.95	17.47

Protein Annotations

EnsemblPlants:GSMUA_Achr1P18140_001	EnsemblPlants:GSMUA_Achr1T18140_001	EnsemblPlantsGene:GSMUA_Achr1G18140_001	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF6	PFAM:PF03759	PFscan:PS51334
SEG:seg	UniParc:UPI0002956245	UniProt:M0S0X2	MapMan:27.4.3.1	:	:

Description

Rop guanine nucleotide exchange factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G18140_001]

Coordinates

chr1:+:13575314..13579174

Molecular Weight (calculated)

61348.0 Da

IEP (calculated)

5.792

GRAVY (calculated)

-0.199

Length

553 amino acids

Sequence
(BLAST)

001: MGSLPEEEEE EYASDLQSDR CGSYSPSADV SESESSGGLS DRAPLAAAAA SAPFASSPLA ALLPADPHLV LWEPKLEKRD TDFSEVEMMK ERFAKLLLGE
101: DMSGGGKGVC TALAISNAIT NLSATVFGEL WRLEPLAALK KAMWRREMDW LLCVSDSIVE LIPSIQDFPG GGTFEVMVSR PRADLHMNLP ALKKLDAMLI
201: GMLDGFQGTE FWYVDRGILE EKWWLPCPRV PPKGLSEVAR KRLQQCRDCV NQILKAAMAI NSGVLAEMVI PDVYNETLPK SGKSCLGEII YHYITAEEFS
301: PDCLLDCLDL SSEHHTLEIA NRIEAAIHVW RLKSQKRHPQ PKEKKTSWRG KVKGLVAVTR KSQFLAERAE GLLQSLKIQY PGLPQTVLDM NKIQYNKDVG
401: QSILESYSRV MESLAFNIMA RIDDLIFVDD ATKKCAAAEA VSIFNRGGMG GLPVQKRMSP SPFSIQNSPY ASPFATPTFC SSTPITESPG RLQTSLSKRS
501: IQFQQEGKMA KIISGDLEKL WSYTGNLSFP LRMVFRWVNM SMNDDLGRFS IVN

Best Arabidopsis Sequence Match ( AT4G38430.1 )
(BLAST)

001: MGSLSSEEDD EVSSERCGSY SPSADISESE SSSSFSCHRF DGEGASSSIP SSPRVVAGRG FYFPAPVMLP VIGGKDVVWD DKQPDNDLSE IEMMKERFAK
101: LLLGEDMSGG GKGVCTALAI SNAITNLSAT VFGELWRLEP LAPQKKAMWR RELEWLLCVS DSIVELIPSI QQFPGGGTYE IMETRPRSDL YANLPALKKL
201: DAMLIDMLDA FSDTEFWYTD RGIVLGDCDK DSYNSPASVR QEDKWWLPCP KVPPNGLSEE ARKKLQQCRD FANQILKAAL AINSGVLAEM EIPDPYLETL
301: PKSGKECLGE IIYQYLTANK FSPECLLDCL DLSSEHQTLE IANRIEAAVH VWRQKNGRRH KKQAKLKLSS WGGKVKGLVN DNERNDFLVQ RAETLLQSLR
401: IRFPGLPQTT LDMNKIQYNK DVGQSILESY SRVMESMAFN ITARIDDVLY VDDAMRRSIS VTESLSLFSI NGLNPQKAFS VQSSPHGSPF ATPALSVASR
501: SPRRAPPLYS VKRNGTREKG IVGETEKAWS YAGNLSSRRV TGVTPERD

Arabidopsis Description

ROPGEF1Rop guanine nucleotide exchange factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.