Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr6P36120_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45890.1 | GSMUA_Achr6P36120_001 | AT5G62880.1 | 22500990 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os10t0550300-00 | Rice | plastid | 58.71 | 59.08 |
| EER91970 | Sorghum | plastid | 59.54 | 58.69 |
| EES11256 | Sorghum | nucleus | 57.05 | 58.39 |
| Zm00001d002696_P001 | Maize | cytosol | 55.81 | 58.23 |
| KRH15734 | Soybean | cytosol | 31.33 | 58.08 |
| KRH65102 | Soybean | nucleus | 57.88 | 58.0 |
| Zm00001d029850_P001 | Maize | nucleus, plastid | 58.71 | 57.87 |
| PGSC0003DMT400000136 | Potato | nucleus | 56.85 | 57.44 |
| Solyc01g094610.2.1 | Tomato | nucleus | 56.85 | 57.44 |
| TraesCS2B01G426300.1 | Wheat | cytosol | 55.39 | 57.42 |
| Os04t0559100-00 | Rice | cytosol | 21.58 | 57.14 |
| Os07t0481100-01 | Rice | cytosol | 54.36 | 56.96 |
| TraesCS2A01G408100.1 | Wheat | cytosol | 55.19 | 56.84 |
| TraesCS1B01G222700.1 | Wheat | plastid | 56.22 | 56.69 |
| TraesCS1D01G211900.1 | Wheat | nucleus | 56.02 | 56.6 |
| TraesCS2D01G405400.1 | Wheat | nucleus | 55.19 | 56.6 |
| TraesCS1A01G208700.1 | Wheat | nucleus | 55.81 | 56.39 |
| VIT_15s0046g02530.t01 | Wine grape | plastid | 58.92 | 56.35 |
| TraesCS6A01G405000.1 | Wheat | nucleus | 53.32 | 56.24 |
| CDY07216 | Canola | cytosol | 55.19 | 56.0 |
| CDY57376 | Canola | cytosol, extracellular, nucleus | 8.71 | 56.0 |
| Zm00001d021489_P001 | Maize | nucleus, plastid | 53.73 | 55.82 |
| HORVU6Hr1G092860.2 | Barley | nucleus | 52.9 | 55.8 |
| HORVU1Hr1G053350.4 | Barley | nucleus, plastid | 55.19 | 55.65 |
| EER99384 | Sorghum | nucleus, plastid | 53.32 | 55.51 |
| AT4G00460.2 | Thale cress | nucleus | 54.36 | 55.39 |
| CDY51157 | Canola | nucleus | 52.28 | 55.38 |
| Bra037342.1-P | Field mustard | cytosol | 54.77 | 55.35 |
| CDX74772 | Canola | nucleus, plastid | 51.45 | 55.11 |
| Bra000971.1-P | Field mustard | nucleus | 54.56 | 55.02 |
| CDY70620 | Canola | nucleus | 53.53 | 55.01 |
| KRH48179 | Soybean | nucleus | 42.74 | 54.93 |
| TraesCS6D01G388300.1 | Wheat | nucleus | 53.11 | 54.82 |
| Bra004945.1-P | Field mustard | nucleus, plastid | 52.28 | 54.78 |
| CDY18892 | Canola | nucleus | 51.04 | 54.42 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 51.66 | 53.78 |
| TraesCS6B01G449200.1 | Wheat | nucleus | 52.49 | 53.72 |
| KRH00737 | Soybean | nucleus, plastid | 55.81 | 52.54 |
| KRH40457 | Soybean | cytosol | 55.19 | 51.95 |
| AT1G01700.4 | Thale cress | nucleus | 55.19 | 51.65 |
| HORVU2Hr1G096430.13 | Barley | mitochondrion | 55.39 | 50.28 |
| KRG94270 | Soybean | mitochondrion | 11.2 | 48.65 |
| GSMUA_Achr9P03750_001 | Banana | cytosol | 46.47 | 48.07 |
| GSMUA_Achr2P09130_001 | Banana | cytosol | 37.55 | 46.29 |
| GSMUA_Achr5P06900_001 | Banana | cytosol | 40.25 | 46.08 |
| GSMUA_Achr2P03580_001 | Banana | nucleus | 45.85 | 43.59 |
| GSMUA_Achr10P... | Banana | cytosol | 46.68 | 43.44 |
| GSMUA_Achr6P14020_001 | Banana | cytosol | 38.8 | 43.39 |
| GSMUA_Achr1P18140_001 | Banana | nucleus | 47.51 | 41.41 |
| CDX91908 | Canola | cytosol | 54.56 | 40.15 |
| GSMUA_Achr3P14650_001 | Banana | nucleus | 46.89 | 39.79 |
| GSMUA_Achr4P10530_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 35.48 | 39.68 |
| GSMUA_Achr3P15410_001 | Banana | nucleus | 40.46 | 39.31 |
| GSMUA_Achr3P03410_001 | Banana | nucleus | 39.42 | 37.55 |
| GSMUA_Achr8P14480_001 | Banana | nucleus | 20.12 | 37.45 |
| GSMUA_Achr11P... | Banana | cytosol | 23.65 | 34.13 |
| GSMUA_Achr8P14490_001 | Banana | cytosol | 12.86 | 32.29 |
| GSMUA_Achr11P... | Banana | cytosol | 8.3 | 21.98 |
| GSMUA_Achr6P14950_001 | Banana | mitochondrion | 46.68 | 16.94 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P20570_001 | EnsemblPlants:GSMUA_Achr5T20570_001 | EnsemblPlantsGene:GSMUA_Achr5G20570_001 | Gene3D:1.20.58.2010 | GO:GO:0003674 | GO:GO:0005085 |
| GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0065009 | InterPro:IPR005512 |
| InterPro:PRONE_dom | InterPro:RopGEF | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF9 | PFAM:PF03759 | PFscan:PS51334 |
| UniParc:UPI0002966482 | UniProt:M0T086 | MapMan:27.4.3.1 | : | : | : |
Description
Rop guanine nucleotide exchange factor 2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G20570_001]
Coordinates
chr5:-:22383283..22386257
Molecular Weight (calculated)
54122.1 Da
IEP (calculated)
5.273
GRAVY (calculated)
-0.453
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSSVSDDN SELDFHPSSD RLTRSNTDMG CSTPGCNSID YSRTISTVST YSEVNDENSS PYDPPPVGWP ISKLVGRASP DLSKHGRKKT DDMLDWKPGS
101: QDISLSELEM MKEKFSKLLL GEDMSGGGKG VCSAVALSNA ITNLYATVFG HFYKLEPVSP EKKNMWRREM DCLLSVCDYI VEFFPSSQTL PDGTTLDIMA
201: TRPRSDIYLN LPALEKLDAM LLDILNSFKK TEFWYVEEGK QSPSASSRSF RRVVQRKDEK WWLPVPCVPD SGLSEEAQRA LQKRRDCANQ IHKAAMAINN
301: SILAEMEVPE SYMASLPKSG RLGVGDSIYR YMSTIEPFSP DHLLDGLNIS SEHDALEIAD RVEASMHVWW RKASMHTSKS SWDMVKDLVA DENKNQILAS
401: KAETLLLCLK QRYPGLSQTT LDTSKIQYNK DVGQAILESY SRVLEGLAFN IVAWIDDVLF VDASVRKRLR ATQQRSQKES LL
101: QDISLSELEM MKEKFSKLLL GEDMSGGGKG VCSAVALSNA ITNLYATVFG HFYKLEPVSP EKKNMWRREM DCLLSVCDYI VEFFPSSQTL PDGTTLDIMA
201: TRPRSDIYLN LPALEKLDAM LLDILNSFKK TEFWYVEEGK QSPSASSRSF RRVVQRKDEK WWLPVPCVPD SGLSEEAQRA LQKRRDCANQ IHKAAMAINN
301: SILAEMEVPE SYMASLPKSG RLGVGDSIYR YMSTIEPFSP DHLLDGLNIS SEHDALEIAD RVEASMHVWW RKASMHTSKS SWDMVKDLVA DENKNQILAS
401: KAETLLLCLK QRYPGLSQTT LDTSKIQYNK DVGQAILESY SRVLEGLAFN IVAWIDDVLF VDASVRKRLR ATQQRSQKES LL
001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE
Arabidopsis Description
ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.