CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88130
EES05544

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45890.1	EER88130	AT5G62880.1	22500990
AT2G45890.1	EES05544	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021489_P001	Maize	nucleus, plastid	93.95	93.75
Os07t0481100-01	Rice	cytosol	85.53	86.09
TraesCS6A01G405000.1	Wheat	nucleus	82.29	83.37
HORVU6Hr1G092860.2	Barley	nucleus	81.43	82.49
TraesCS6D01G388300.1	Wheat	nucleus	82.51	81.8
TraesCS6B01G449200.1	Wheat	nucleus	82.07	80.68
GSMUA_Achr5P20570_001	Banana	nucleus	55.51	53.32
EES11256	Sorghum	nucleus	53.78	52.87
EER91970	Sorghum	plastid	54.64	51.74
KRH15734	Soybean	cytosol	28.29	50.38
KRH65102	Soybean	nucleus	51.84	49.9
Solyc01g094610.2.1	Tomato	nucleus	51.4	49.9
PGSC0003DMT400000136	Potato	nucleus	51.4	49.9
KRG94270	Soybean	mitochondrion	11.88	49.55
AT4G00460.2	Thale cress	nucleus	49.68	48.63
CDY70620	Canola	nucleus	49.24	48.61
Bra000971.1-P	Field mustard	nucleus	49.68	48.12
VIT_15s0046g02530.t01	Wine grape	plastid	52.27	48.02
CDY57376	Canola	cytosol, extracellular, nucleus	7.78	48.0
CDY51157	Canola	nucleus	47.08	47.91
CDY07216	Canola	cytosol	49.03	47.79
KRH48179	Soybean	nucleus	38.66	47.73
Bra037342.1-P	Field mustard	cytosol	49.03	47.59
CDX74772	Canola	nucleus, plastid	45.14	46.44
KRH00737	Soybean	nucleus, plastid	51.19	46.29
KRH40457	Soybean	cytosol	51.19	46.29
CDY18892	Canola	nucleus	45.14	46.24
AT2G45890.1	Thale cress	nucleus, plastid	45.79	45.79
Bra004945.1-P	Field mustard	nucleus, plastid	45.36	45.65
AT1G01700.4	Thale cress	nucleus	49.24	44.27
EES03886	Sorghum	cytosol	46.87	39.82
EER99291	Sorghum	nucleus, plastid	45.14	37.39
OQU84790	Sorghum	cytosol	34.99	36.82
EES18335	Sorghum	cytosol	46.44	36.69
CDX91908	Canola	cytosol	49.46	34.96
OQU87589	Sorghum	nucleus	35.85	32.11
KXG33101	Sorghum	mitochondrion	38.44	31.84
EES19937	Sorghum	mitochondrion	37.37	31.45
KXG30927	Sorghum	cytosol	32.83	28.15

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	EntrezGene:8077434	UniProt:C5X8K2	ncoils:Coil	EnsemblPlants:EER99384
ProteinID:EER99384	ProteinID:EER99384.1	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	PFAM:PF03759	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF5	InterPro:RopGEF	EnsemblPlantsGene:SORBI_3002G302800	UniParc:UPI0001A83F7D
RefSeq:XP_002462863.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:67888132..67890903

Molecular Weight (calculated)

52335.0 Da

IEP (calculated)

6.400

GRAVY (calculated)

-0.526

Length

463 amino acids

Sequence
(BLAST)

001: MSDGSGFPGF HSHSYDRDYA RPLFRVASFS DSGDEQENHV SSPQARSHST SRTTSSKAVA PSRLSPSVSR PSMKNMQQVI DEKSMEEEEM ELMKEKYTKL
101: LLGEDMSGSG KGVCTAVAIS NSITNLYATV FGTCHRLGPL SPEKRSMWNR EMDCLLSICE YIVEFSPTVQ TMPDGSTHDV MATSPRSDIL MNLPALEKLE
201: TMLLGILDSF HKPEFWYADQ RNQSFNESKK SFQRSEDKWW LPEPCVPDAG LSDRMHRELQ QNRDQASQIH KMAMEINSSI LSEMQVPLSY LETLPKSGRV
301: GVGDAIYRYM SSGDQFSPEH LLNFLNLSSE HEALEIADRV EAAMYVWRRK ASTTHVVSKW ENVTELNADG DKNLILASRA RSLLLCLKQR FPGLSQTTLD
401: TSKIQYNKDI GQAILESYSR VLESLAHNIV SWIDDILIAN ENAKKGHKIR MQKQVFSQIS PQR

Best Arabidopsis Sequence Match ( AT4G00460.2 )
(BLAST)

001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE

Arabidopsis Description

ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.