Factsheet for Solyc01g094610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000136	Potato	nucleus	98.74	98.74
KRH65102	Soybean	nucleus	69.39	68.81
KRH48179	Soybean	nucleus	53.25	67.73
KRH15734	Soybean	cytosol	35.64	65.38
AT4G00460.2	Thale cress	nucleus	64.57	65.12
Bra000971.1-P	Field mustard	nucleus	63.31	63.18
CDY70620	Canola	nucleus	62.05	63.11
CDY07216	Canola	cytosol	62.68	62.95
Bra037342.1-P	Field mustard	cytosol	62.47	62.47
CDY51157	Canola	nucleus	59.12	61.98
VIT_15s0046g02530.t01	Wine grape	plastid	64.36	60.91
AT1G01700.4	Thale cress	nucleus	64.78	60.0
KRH00737	Soybean	nucleus, plastid	64.36	59.96
KRH40457	Soybean	cytosol	63.52	59.18
Os10t0550300-00	Rice	plastid	57.23	56.99
GSMUA_Achr5P20570_001	Banana	nucleus	57.44	56.85
KRG94270	Soybean	mitochondrion	13.21	56.76
EES11256	Sorghum	nucleus	54.09	54.78
Zm00001d002696_P001	Maize	cytosol	53.04	54.76
TraesCS1B01G222700.1	Wheat	plastid	54.72	54.6
TraesCS1D01G211900.1	Wheat	nucleus	54.51	54.51
TraesCS2B01G426300.1	Wheat	cytosol	52.83	54.19
EER91970	Sorghum	plastid	55.56	54.19
TraesCS1A01G208700.1	Wheat	nucleus	54.09	54.09
HORVU1Hr1G053350.4	Barley	nucleus, plastid	53.88	53.77
TraesCS2A01G408100.1	Wheat	cytosol	52.62	53.63
TraesCS2D01G405400.1	Wheat	nucleus	52.83	53.62
Zm00001d029850_P001	Maize	nucleus, plastid	54.3	52.97
Zm00001d021489_P001	Maize	nucleus, plastid	50.1	51.51
HORVU6Hr1G092860.2	Barley	nucleus	49.27	51.42
EER99384	Sorghum	nucleus, plastid	49.9	51.4
TraesCS6A01G405000.1	Wheat	nucleus	48.64	50.77
Os07t0481100-01	Rice	cytosol	48.85	50.65
TraesCS6D01G388300.1	Wheat	nucleus	49.48	50.54
Os04t0559100-00	Rice	cytosol	19.08	50.0
TraesCS6B01G449200.1	Wheat	nucleus	49.27	49.89
HORVU2Hr1G096430.13	Barley	mitochondrion	52.41	47.08
CDX91908	Canola	cytosol	62.68	45.65
Solyc08g006550.2.1	Tomato	nucleus	49.27	44.34
Solyc07g032730.2.1	Tomato	nucleus	35.22	41.08
Solyc04g082110.2.1	Tomato	nucleus	37.95	40.13
Solyc09g011480.2.1	Tomato	nucleus	48.64	39.46
Solyc01g111930.2.1	Tomato	nucleus	46.33	38.3
Solyc06g066650.2.1	Tomato	nucleus	37.32	37.95
Solyc12g044270.1.1	Tomato	nucleus	39.2	35.62
Solyc03g120650.2.1	Tomato	cytosol	37.32	35.46
Solyc10g086660.1.1	Tomato	nucleus	48.85	34.32
Solyc12g007150.1.1	Tomato	nucleus	37.74	32.43
Solyc08g075120.2.1	Tomato	extracellular	38.16	32.33
Solyc12g096220.1.1	Tomato	nucleus	36.9	24.18

Protein Annotations

EnsemblPlants:Solyc01g094610.2.1	EnsemblPlantsGene:Solyc01g094610.2	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	InterPro:PRONE_dom
InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF9	PFAM:PF03759	PFscan:PS51334	SEG:seg
UniParc:UPI0002768988	UniProt:K4AZK2	MapMan:27.4.3.1	:	:	:

Description

Rop guanine nucleotide exchange factor 4 [Source:Projected from Arabidopsis thaliana (AT2G45890) UniProtKB/Swiss-Prot;Acc:Q0WNP7]

Coordinates

chr1:+:86031478..86033607

Molecular Weight (calculated)

53771.4 Da

IEP (calculated)

5.185

GRAVY (calculated)

-0.511

Length

477 amino acids

Sequence
(BLAST)

001: MDNISSTDES YDVGYGYQPS PSSIDDQSPT ETTGLSTLSG NSFAYCRTNS ETSAFSEHTD ENSWSEAGSP LSSRSLKSPT RAVLSRLGMR QHKTIADDPD
101: TVDLELELMK ERFSKLLLGE DMSGGGKGVA TAVTISNSIT NLYASVFGQH QRLEPLHPDK KIMWKREMNC LLSVCDYIVE FVSTSQMLQD GTTIEALTSR
201: PRSDIHINLP ALRKLDTMLL EILDSFEATE FWYAEKGSIS NNSTRAGSFR KIVQVQPQPQ RKEEKWWLPV VCVPSDGITE KERKNLRHKR DCANQIHKAA
301: MAINSSILAE MEIPESYMTS LPKSGKASVG DSMYRHMYSA EKFSPEQLLD SLNISSEHEA LELADKVEAS MYTWRRKSCL PQAKSSWIMV KDLVSDDRTD
401: KNNVLAERAE SLLYCLKQRY PELSQTTLDT SKIHFNRDVG KAILESYSRV LESLAFNVVA WIEDVLFVDK TMKNQEE

Best Arabidopsis Sequence Match ( AT4G00460.2 )
(BLAST)

001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE

Arabidopsis Description

ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.