Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G408100.1 | Wheat | cytosol | 97.87 | 98.29 |
| TraesCS2B01G426300.1 | Wheat | cytosol | 97.23 | 98.28 |
| HORVU2Hr1G096430.13 | Barley | mitochondrion | 95.11 | 84.18 |
| Zm00001d002696_P001 | Maize | cytosol | 80.0 | 81.39 |
| EES11256 | Sorghum | nucleus | 81.28 | 81.1 |
| Os04t0559100-00 | Rice | cytosol | 28.09 | 72.53 |
| TraesCS1D01G211900.1 | Wheat | nucleus | 57.87 | 57.02 |
| GSMUA_Achr5P20570_001 | Banana | nucleus | 56.6 | 55.19 |
| KRH15734 | Soybean | cytosol | 29.57 | 53.46 |
| Solyc01g094610.2.1 | Tomato | nucleus | 53.62 | 52.83 |
| PGSC0003DMT400000136 | Potato | nucleus | 53.62 | 52.83 |
| TraesCS6D01G388300.1 | Wheat | nucleus | 52.13 | 52.46 |
| CDY57376 | Canola | cytosol, extracellular, nucleus | 8.3 | 52.0 |
| CDY70620 | Canola | nucleus | 50.85 | 50.96 |
| KRH65102 | Soybean | nucleus | 52.13 | 50.94 |
| CDY07216 | Canola | cytosol | 51.28 | 50.74 |
| CDY51157 | Canola | nucleus | 48.94 | 50.55 |
| AT4G00460.2 | Thale cress | nucleus | 50.85 | 50.53 |
| Bra000971.1-P | Field mustard | nucleus | 51.06 | 50.21 |
| Bra037342.1-P | Field mustard | cytosol | 50.64 | 49.9 |
| KRH48179 | Soybean | nucleus | 39.79 | 49.87 |
| VIT_15s0046g02530.t01 | Wine grape | plastid | 53.19 | 49.6 |
| CDX74772 | Canola | nucleus, plastid | 46.81 | 48.89 |
| CDY18892 | Canola | nucleus | 46.6 | 48.45 |
| KRH00737 | Soybean | nucleus, plastid | 52.77 | 48.44 |
| Bra004945.1-P | Field mustard | nucleus, plastid | 47.02 | 48.04 |
| KRH40457 | Soybean | cytosol | 52.13 | 47.85 |
| AT1G01700.4 | Thale cress | nucleus | 52.13 | 47.57 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 46.6 | 47.3 |
| KRG94270 | Soybean | mitochondrion | 10.43 | 44.14 |
| TraesCS5D01G346100.1 | Wheat | cytosol | 43.62 | 42.36 |
| TraesCS3D01G357800.1 | Wheat | cytosol | 47.66 | 41.64 |
| TraesCS1D01G280000.1 | Wheat | cytosol | 47.23 | 39.71 |
| CDX91908 | Canola | cytosol | 51.06 | 36.64 |
| TraesCS3D01G296400.1 | Wheat | cytosol | 35.74 | 36.36 |
| TraesCS3D01G270200.1 | Wheat | plastid | 38.72 | 35.14 |
| TraesCS6D01G183300.1 | Wheat | mitochondrion | 36.81 | 33.99 |
| TraesCS1D01G400200.2 | Wheat | plastid | 37.66 | 31.33 |
| TraesCS6D01G244200.1 | Wheat | cytosol | 32.77 | 28.36 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G405400.1 | EnsemblPlantsGene:TraesCS2D01G405400 | Gene3D:1.20.58.2010 | GO:GO:0003674 | GO:GO:0005089 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR005512 | InterPro:PRONE_dom | InterPro:RopGEF | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF7 |
| PFAM:PF03759 | PFscan:PS51334 | SEG:seg | MapMan:27.4.3.1 | : | : |
Description
No Description!
Coordinates
chr2D:-:520525405..520527424
Molecular Weight (calculated)
52108.7 Da
IEP (calculated)
5.515
GRAVY (calculated)
-0.470
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTPTSSTWE EGSQSDYADF DDDDVPLDHQ RAGVLRALNL RRDDGDDGAA SDVSSECSGE PGSPYGSPYP RWPVCKLAAR MPPPAPLLQR LGTEPRRGGA
101: RDRKAGCTEL QLMKERFSKL LLGEDMSGGG KGVSTAAAIS NAITNLYATV FGSCHRLEPL PVEKKSMWRR EMDCLLSVCD YIVEFFPSKD ILPDGTTREV
201: MATRPRSDIY VNLPALEKLD DMLLEILDGF QKTEFWYLND KAHKDSCDDS APCRPASHRG EERWWLPVPC VTKSGLTEPA RRDLRQKHDC ASQIHKAAMA
301: INNGILAEIK IPESYTQTLP KCGRASVGDA LYRGMSFPGK FSPEYLLDCL EISSEHEALE AADRVEAAMH VWRRKAGHGH ARSPWGAVKD LMESDKNVML
401: ASRAEDALLC LKHRFPGLSQ TTLDASKIQH NKDVGQAVLE SYSRVLESLA YTIVTCIDDV LFADESARKI
101: RDRKAGCTEL QLMKERFSKL LLGEDMSGGG KGVSTAAAIS NAITNLYATV FGSCHRLEPL PVEKKSMWRR EMDCLLSVCD YIVEFFPSKD ILPDGTTREV
201: MATRPRSDIY VNLPALEKLD DMLLEILDGF QKTEFWYLND KAHKDSCDDS APCRPASHRG EERWWLPVPC VTKSGLTEPA RRDLRQKHDC ASQIHKAAMA
301: INNGILAEIK IPESYTQTLP KCGRASVGDA LYRGMSFPGK FSPEYLLDCL EISSEHEALE AADRVEAAMH VWRRKAGHGH ARSPWGAVKD LMESDKNVML
401: ASRAEDALLC LKHRFPGLSQ TTLDASKIQH NKDVGQAVLE SYSRVLESLA YTIVTCIDDV LFADESARKI
001: MENLPNHEEN DDVGYHQSPG PIDPNDHSAS ETPVYSTMST DSFAYHRTCS ETSGGGFSDQ IDETSSFCTE ASPSDWPVLT ESNNSASSNF PTVFDLKHNQ
101: IETDEHLAVQ EISEPELETM KERFSKLLLG EDMSGSGKGV CTAVTISNAI TNLYATVFGQ NLRLEPLEIE QKTTWKREMN CLLSVCDYIF EFIPKSQNLS
201: NGATVEVMES RPRADIYINL PALRKLDSML MEALDSFQKT EFWYAEEGSL SMKSTRSATG SFRKVIVQRK EEKWWLPIPL VPLQGLSEKA RKQLKSKRES
301: TNQIHKAAMA INSSILGEMD IPDSYMATLP KSGKASTGDA IYRHMTSSGR FSPEKLLDRL KIVSEHEALQ LADRVEASMY TWRRKACLNN SKSSWNMVKD
401: LMSITERSDK NYVLAERAES LLFCLKQRYP ELSQTSLDIC KIHCNKDVGK AVLESYSRVL EGLAFNIVAW IDDVLYVDKT MRGEE
101: IETDEHLAVQ EISEPELETM KERFSKLLLG EDMSGSGKGV CTAVTISNAI TNLYATVFGQ NLRLEPLEIE QKTTWKREMN CLLSVCDYIF EFIPKSQNLS
201: NGATVEVMES RPRADIYINL PALRKLDSML MEALDSFQKT EFWYAEEGSL SMKSTRSATG SFRKVIVQRK EEKWWLPIPL VPLQGLSEKA RKQLKSKRES
301: TNQIHKAAMA INSSILGEMD IPDSYMATLP KSGKASTGDA IYRHMTSSGR FSPEKLLDRL KIVSEHEALQ LADRVEASMY TWRRKACLNN SKSSWNMVKD
401: LMSITERSDK NYVLAERAES LLFCLKQRYP ELSQTSLDIC KIHCNKDVGK AVLESYSRVL EGLAFNIVAW IDDVLYVDKT MRGEE
Arabidopsis Description
ATROPGEF2RHO guanyl-nucleotide exchange factor 2 [Source:TAIR;Acc:AT1G01700]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.