Factsheet for TraesCS3D01G357800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G396500.1	Wheat	cytosol	96.84	96.66
TraesCS3A01G364400.1	Wheat	nucleus	96.47	95.93
Os01t0849100-01	Rice	cytosol	82.16	80.95
EES03886	Sorghum	cytosol	81.6	80.55
HORVU3Hr1G085680.2	Barley	plastid	92.94	76.57
Zm00001d042861_P001	Maize	cytosol	79.74	74.87
TraesCS1D01G280000.1	Wheat	cytosol	70.26	67.62
GSMUA_Achr9P03750_001	Banana	cytosol	57.06	65.88
PGSC0003DMT400067654	Potato	nucleus	57.99	58.65
Solyc08g006550.2.1	Tomato	nucleus	57.62	58.49
AT5G02010.1	Thale cress	nucleus	55.02	54.21
VIT_13s0019g02710.t01	Wine grape	nucleus	59.11	53.36
CDY40325	Canola	nucleus	55.39	53.21
CDY10476	Canola	nucleus	55.39	53.21
Bra009621.1-P	Field mustard	nucleus	55.39	53.21
VIT_08s0007g01380.t01	Wine grape	nucleus	59.85	52.87
KRH73109	Soybean	nucleus	54.46	52.6
KRH00070	Soybean	nucleus	58.18	51.06
TraesCS5D01G346100.1	Wheat	cytosol	45.91	51.03
Solyc09g011480.2.1	Tomato	nucleus	55.02	50.34
KRG97804	Soybean	nucleus	54.83	49.75
KRH31060	Soybean	nucleus	55.02	49.5
Bra009152.1-P	Field mustard	cytosol, plastid	54.46	49.24
KRH15022	Soybean	nucleus	50.93	48.84
KRH75747	Soybean	nucleus	52.97	48.72
KRH65969	Soybean	nucleus	54.65	48.68
AT5G05940.1	Thale cress	cytosol	54.65	48.12
TraesCS2D01G405400.1	Wheat	nucleus	41.64	47.66
CDY41197	Canola	cytosol, plastid	48.7	47.29
CDY40246	Canola	cytosol, plastid	48.7	47.04
TraesCS1D01G211900.1	Wheat	nucleus	41.45	46.75
Solyc10g086660.1.1	Tomato	nucleus	58.74	46.54
CDX70109	Canola	cytosol	54.46	46.29
AT3G55660.1	Thale cress	cytosol, plastid	49.81	46.29
TraesCS6D01G388300.1	Wheat	nucleus	40.15	46.25
PGSC0003DMT400049230	Potato	nucleus	59.29	46.1
CDX98888	Canola	cytosol	54.46	45.92
Bra007183.1-P	Field mustard	cytosol, plastid	48.7	45.88
PGSC0003DMT400005554	Potato	cytosol, plastid	55.2	45.07
Zm00001d047899_P001	Maize	cytosol	22.86	44.24
KRH49210	Soybean	nucleus, plastid	58.36	43.92
VIT_08s0007g01390.t01	Wine grape	nucleus	47.96	43.36
TraesCS3D01G296400.1	Wheat	cytosol	34.76	40.48
Zm00001d023356_P001	Maize	cytosol	25.65	38.87
TraesCS3D01G270200.1	Wheat	plastid	37.36	38.8
TraesCS6D01G183300.1	Wheat	mitochondrion	35.87	37.92
Zm00001d037119_P001	Maize	plastid	29.93	37.35
Zm00001d049679_P001	Maize	plastid	29.37	35.75
TraesCS1D01G400200.2	Wheat	plastid	36.99	35.22
TraesCS6D01G244200.1	Wheat	cytosol	34.01	33.7
GSMUA_Achr6P14950_001	Banana	mitochondrion	53.72	21.76

Protein Annotations

EnsemblPlants:TraesCS3D01G357800.1	EnsemblPlantsGene:TraesCS3D01G357800	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101
PANTHER:PTHR33101:SF1	PFAM:PF03759	PFscan:PS51334	SEG:seg	MapMan:27.4.3.1	:

Description

No Description!

Coordinates

chr3D:-:470890002..470895118

Molecular Weight (calculated)

59190.7 Da

IEP (calculated)

6.712

GRAVY (calculated)

-0.324

Length

538 amino acids

Sequence
(BLAST)

001: MGSGEEERGG ASEAAFTDSA DGSSSSSDAA STDDWPALAL AAPKKTPACG GAPDAEMSGK QKRRAGPEME LMKERFAKLL LGEDMSGSGK GVCTALAIAN
101: AITNLCATIF GQLWRLEPLQ PEKKAMWRRE MDWLLCISDH IVELVPTWQS FPDGTRLEIM TSRPRSDLYI NLPALRKLDH MLLEILDSFR DTEFWYVDQG
201: ICAADCDGSA SFRAAFHRRD DKWWLPVPRV PPGGLRDKTR KQLQHKRDCA NQILKAAMAI NSNALAEMDV PESYLDSLPK NGRATLGDVI YRYITSDHFS
301: PECLLDSLDL STEYQALEIA SRVEASVHVW RRRVPAKPVN GLGRTASARS WSMVRDMLMD SEKRELLAER AEGLLICLKQ RFPALTQTSL DMSKIQYNKD
401: VGKSILESYS RVLESLASNI VARIDDLLNI DELNRHVEQL PSGEADLKMA CGRAVVPPYQ QVPALGTPFL TAYATPSFSP GRLSSPRTSV GAGRRTQGSR
501: AAAAAKKALT DHLGPSEVRG MIIVNRSTMI DVSTTTDL

Best Arabidopsis Sequence Match ( AT5G05940.1 )
(BLAST)

001: MENLVKSCAG IEKKRSNLTP SMEDILTESK ERSSTSGASY ESSSTTTVAS SSPPPPPSQI LGWPIRKASF RKNSKESVNF DHKKLTLHDD SGFKAKEMNS
101: ADVEMMKERF AKLLLGEDMS GSGKGVCTAL AISNAITNLC ATIFGQLWRL EPLSSEKKEM WRREMEWILS VSDHIVELTP STQTYPDGNK FEVMTCRPRF
201: DLFINLPALR KLDNMLLDIL ASFKKTEFWY VDQGIVASEN DGSASFRRKI QRQEEKWWLP VPRLAPNGLT EEARTELNHK RECATQILKA AMAINSLALT
301: EMDVPKSYLE TLPKNGRSCL GDVIYRYVTS DKFSAESLLD CLDLSSEHIA LDIANRVEAS IYVWRRRVQT KLGVNNNTSS TTPKLTWEMV KELMAAGDKR
401: GLLVERSETL LRCLKQRFPS LTQTSLDISK IQWNKDIGKS ILESYSRALE SLASNIIARI DDLLYVDDLT KQSDDNNLLS SPAVSSIIAH KKVVPLPYLI
501: SASGTPYRTS FSTTPGFSPS MISPKKGERR TPYSSKDTNK IIEKGLPSRG YGVRRVLNNY LGMESKLKIC VNPSDNADTA VINQISKDVE EEKKRNSTSV
601: HQKGPPKYTV S

Arabidopsis Description

ROPGEF5Rop guanine nucleotide exchange factor 5 [Source:UniProtKB/Swiss-Prot;Acc:F4K295]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.