Factsheet for Solyc10g086660.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049230	Potato	nucleus	96.61	94.8
Solyc09g011480.2.1	Tomato	nucleus	64.21	74.15
GSMUA_Achr9P03750_001	Banana	cytosol	50.07	72.96
VIT_08s0007g01380.t01	Wine grape	nucleus	62.15	69.29
AT5G02010.1	Thale cress	nucleus	51.4	63.92
CDY10476	Canola	nucleus	51.4	62.32
CDY40325	Canola	nucleus	51.25	62.14
Solyc08g006550.2.1	Tomato	nucleus	48.31	61.89
Bra009621.1-P	Field mustard	nucleus	50.96	61.79
KRH00070	Soybean	nucleus	55.52	61.5
EES03886	Sorghum	cytosol	48.9	60.92
Os01t0849100-01	Rice	cytosol	48.16	59.89
TraesCS3A01G364400.1	Wheat	nucleus	46.83	58.78
TraesCS3D01G357800.1	Wheat	cytosol	46.54	58.74
TraesCS3B01G396500.1	Wheat	cytosol	46.54	58.63
KRH65969	Soybean	nucleus	51.84	58.28
KRH75747	Soybean	nucleus	50.07	58.12
TraesCS1D01G280000.1	Wheat	cytosol	47.42	57.6
HORVU1Hr1G072910.3	Barley	cytosol	47.57	57.27
TraesCS1B01G289900.1	Wheat	cytosol	47.57	57.07
Zm00001d042861_P001	Maize	cytosol	48.01	56.89
Os05t0454200-01	Rice	nucleus	47.42	56.69
KRH49210	Soybean	nucleus, plastid	58.47	55.52
EES18335	Sorghum	cytosol	47.72	55.29
TraesCS1A01G280900.2	Wheat	cytosol	46.69	53.82
Zm00001d010062_P001	Maize	peroxisome	45.51	53.55
VIT_08s0007g01390.t01	Wine grape	nucleus	44.62	50.92
HORVU3Hr1G085680.2	Barley	plastid	48.45	50.38
Solyc01g094610.2.1	Tomato	nucleus	34.32	48.85
Solyc04g082110.2.1	Tomato	nucleus	32.25	48.56
Solyc01g111930.2.1	Tomato	nucleus	41.24	48.53
Solyc07g032730.2.1	Tomato	nucleus	27.69	45.97
Solyc06g066650.2.1	Tomato	nucleus	28.87	41.79
Solyc03g120650.2.1	Tomato	cytosol	30.04	40.64
Solyc12g044270.1.1	Tomato	nucleus	29.6	38.29
Zm00001d047899_P001	Maize	cytosol	15.17	37.05
Solyc12g007150.1.1	Tomato	nucleus	29.75	36.4
Zm00001d023356_P001	Maize	cytosol	18.41	35.21
Solyc08g075120.2.1	Tomato	extracellular	28.28	34.1
Zm00001d037119_P001	Maize	plastid	20.18	31.79
Zm00001d049679_P001	Maize	plastid	20.03	30.77
Solyc12g096220.1.1	Tomato	nucleus	28.13	26.24
GSMUA_Achr6P14950_001	Banana	mitochondrion	50.66	25.9

Protein Annotations

EnsemblPlants:Solyc10g086660.1.1	EnsemblPlantsGene:Solyc10g086660.1	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	InterPro:PRONE_dom
InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF14	PFAM:PF03759	PFscan:PS51334	SEG:seg
UniParc:UPI0002769624	UniProt:K4D497	MapMan:27.4.3.1	:	:	:

Description

No Description!

Coordinates

chr10:-:65439119..65442191

Molecular Weight (calculated)

76246.2 Da

IEP (calculated)

6.259

GRAVY (calculated)

-0.524

Length

679 amino acids

Sequence
(BLAST)

001: MDRLESHKDK RREFQPQLKH FIQLDPCVSS KKENHFSVLK FKVSKSIKNL YQKAKVSKRF GSKRFDFDGI VMTNSVYSAS SLDDKMEVLS DKSDGAERVM
101: EGYGESLDEK IGIGSSSSSV LLASEENVNE ENSGSEDSCS PSSIVWHIQD DEVQHCANSD VSEEVEKPFV DKRKLEKQGS CLSEIEMMKE RFSKLLLGED
201: MSGCGNGVCT ALAISNAITN LCATLFGQIW RLEPLAPEKK LMWRREMEWL LCVSDHIVEL IPSWQTFPDG SKLEVMTSRP RSDLYVNLPA LRKLDNMLLD
301: ILDSFRSTEF WYVDQGILAP ESDGSSSFRN PLPRQEEKWW LPVPRTPPGG LSENARRQLQ HKRDCTNQIL KAAMAINSNS LAEMEVPESY YEGLPKNGKA
401: SLGDLIHRYI TSDQFSPECL LDCLDMSSEH QAFEIANRVE SSIYVWRRRA HSKPFGSTHR SNSKSSWEMV KDLMVDGDKR ELLADRAESL LLCLKQRFPG
501: LPQTTLDMSK IQYNKDVGKS ILESYSRVLE SLAFNIIARV DDLLYADDLN KHSDQFVPIS KVGIIAHKSM GTPLSVPVNG TPYKTAFTTP SFSPSQHISP
601: AKGDRSKMFE GSKLSTRGFG VKKVLTDYLS IDSNGKDDFK RSDSCSSTSQ DVSATASSRS SECSREVISP LTHDSAAKE

Best Arabidopsis Sequence Match ( AT5G02010.1 )
(BLAST)

001: MDGSSENLPE VEEKGRESSC CSSETTRQEE EEQSPSCTED FTASPVSSRW SVKNIDGEKK KIRSDSRVSE VEMMKERFSK LLLGEDMSGS GNGVCTALAI
101: SNAITNLCAT LFGQLWRLEP LPTEKKEMWR REMEWLLCVS DHIVEMTPTW QTFPDGTKLE IMTCRPRSDL YVNLPALRKL DNMLLEILDS FEETEFWYVD
201: QGIMAHESAA DGSSSFRKSF QRQEDKWWLP VPRVSPGGLQ ENSRKQLQHK RDCTNQILKA AMAINSITLA DMEIPESYLE SLPRKGRSCL GDLIYRYISS
301: DQFSPECLLD CLDLSSEHQA IEIANRVESS IYLWHKRTNS KPATNTKTSW EMVKELMVDA DKLELMADRA ESLLLSLKQR FPGLPQTALD MSKIQYNKDI
401: GKSILESYSR VLESLAFNIV ARIDDLLFVD DLTRHSSDQI PTTLGNNGND APKSIAVPVS NYTTPSYSPS KQELRSSITV PPSPSRFKIP HSSSVKRVLT
501: AYVTKNEPRL KNLPLERSSR SSSSERLSLE KCMKESLNVS NLDPGI

Arabidopsis Description

ROPGEF7Rop guanine nucleotide exchange factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.