Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40325 | Canola | nucleus | 91.21 | 88.93 |
| CDY10476 | Canola | nucleus | 91.21 | 88.93 |
| Bra009621.1-P | Field mustard | nucleus | 91.21 | 88.93 |
| GSMUA_Achr9P03750_001 | Banana | cytosol | 55.49 | 65.02 |
| VIT_08s0007g01380.t01 | Wine grape | nucleus | 64.84 | 58.13 |
| KRH00070 | Soybean | nucleus | 64.84 | 57.75 |
| Solyc09g011480.2.1 | Tomato | nucleus | 62.09 | 57.65 |
| EES03886 | Sorghum | cytosol | 55.49 | 55.6 |
| Os01t0849100-01 | Rice | cytosol | 55.31 | 55.31 |
| TraesCS3D01G357800.1 | Wheat | cytosol | 54.21 | 55.02 |
| TraesCS3B01G396500.1 | Wheat | cytosol | 54.21 | 54.92 |
| TraesCS3A01G364400.1 | Wheat | nucleus | 54.4 | 54.9 |
| HORVU1Hr1G072910.3 | Barley | cytosol | 55.68 | 53.9 |
| TraesCS1D01G280000.1 | Wheat | cytosol | 55.13 | 53.85 |
| KRH75747 | Soybean | nucleus | 57.51 | 53.68 |
| TraesCS1B01G289900.1 | Wheat | cytosol | 55.31 | 53.36 |
| KRH65969 | Soybean | nucleus | 58.97 | 53.31 |
| Zm00001d042861_P001 | Maize | cytosol | 55.49 | 52.88 |
| Os05t0454200-01 | Rice | nucleus | 54.4 | 52.29 |
| PGSC0003DMT400005554 | Potato | cytosol, plastid | 62.27 | 51.59 |
| Solyc10g086660.1.1 | Tomato | nucleus | 63.92 | 51.4 |
| EES18335 | Sorghum | cytosol | 55.13 | 51.37 |
| PGSC0003DMT400049230 | Potato | nucleus | 64.47 | 50.87 |
| Zm00001d010062_P001 | Maize | peroxisome | 53.66 | 50.78 |
| TraesCS1A01G280900.2 | Wheat | cytosol | 54.03 | 50.08 |
| KRH49210 | Soybean | nucleus, plastid | 64.84 | 49.51 |
| AT4G00460.2 | Thale cress | nucleus | 42.67 | 49.26 |
| AT5G05940.1 | Thale cress | cytosol | 54.4 | 48.61 |
| VIT_08s0007g01390.t01 | Wine grape | nucleus | 51.83 | 47.56 |
| AT4G38430.1 | Thale cress | nucleus | 47.25 | 47.08 |
| AT3G55660.1 | Thale cress | cytosol, plastid | 49.45 | 46.63 |
| HORVU3Hr1G085680.2 | Barley | plastid | 54.95 | 45.94 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 38.46 | 45.36 |
| AT1G01700.4 | Thale cress | nucleus | 41.21 | 43.69 |
| AT3G24620.1 | Thale cress | nucleus | 36.08 | 37.67 |
| AT4G13240.1 | Thale cress | nucleus | 35.35 | 37.33 |
| AT1G79860.1 | Thale cress | nucleus | 35.16 | 37.28 |
| AT1G52240.1 | Thale cress | nucleus | 37.0 | 37.2 |
| AT3G16130.1 | Thale cress | nucleus | 36.08 | 36.62 |
| AT5G19560.4 | Thale cress | mitochondrion | 34.07 | 36.33 |
| Zm00001d047899_P001 | Maize | cytosol | 18.32 | 35.97 |
| Zm00001d023356_P001 | Maize | cytosol | 21.61 | 33.24 |
| Zm00001d037119_P001 | Maize | plastid | 23.99 | 30.39 |
| Zm00001d049679_P001 | Maize | plastid | 23.99 | 29.64 |
| AT1G31650.1 | Thale cress | mitochondrion, nucleus | 30.77 | 29.17 |
| GSMUA_Achr6P14950_001 | Banana | mitochondrion | 55.13 | 22.67 |
Protein Annotations
| Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | EntrezGene:831858 | ProteinID:AED90419.1 | ArrayExpress:AT5G02010 | EnsemblPlantsGene:AT5G02010 |
| RefSeq:AT5G02010 | TAIR:AT5G02010 | RefSeq:AT5G02010-TAIR-G | EnsemblPlants:AT5G02010.1 | TAIR:AT5G02010.1 | Symbol:ATROPGEF7 |
| Unigene:At.50417 | EMBL:BT015831 | EMBL:BT020213 | ProteinID:CAB82974.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005085 | GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0065009 | InterPro:IPR005512 | RefSeq:NP_195821.1 | PFAM:PF03759 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0009062 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | InterPro:PRONE_dom | PFscan:PS51334 |
| PANTHER:PTHR33101 | PANTHER:PTHR33101:SF14 | UniProt:Q9LZN0 | InterPro:RopGEF | UniParc:UPI00000A7BEA | SEG:seg |
Description
ROPGEF7Rop guanine nucleotide exchange factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZN0]
Coordinates
chr5:+:383153..385910
Molecular Weight (calculated)
61756.2 Da
IEP (calculated)
5.181
GRAVY (calculated)
-0.539
Length
546 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGSSENLPE VEEKGRESSC CSSETTRQEE EEQSPSCTED FTASPVSSRW SVKNIDGEKK KIRSDSRVSE VEMMKERFSK LLLGEDMSGS GNGVCTALAI
101: SNAITNLCAT LFGQLWRLEP LPTEKKEMWR REMEWLLCVS DHIVEMTPTW QTFPDGTKLE IMTCRPRSDL YVNLPALRKL DNMLLEILDS FEETEFWYVD
201: QGIMAHESAA DGSSSFRKSF QRQEDKWWLP VPRVSPGGLQ ENSRKQLQHK RDCTNQILKA AMAINSITLA DMEIPESYLE SLPRKGRSCL GDLIYRYISS
301: DQFSPECLLD CLDLSSEHQA IEIANRVESS IYLWHKRTNS KPATNTKTSW EMVKELMVDA DKLELMADRA ESLLLSLKQR FPGLPQTALD MSKIQYNKDI
401: GKSILESYSR VLESLAFNIV ARIDDLLFVD DLTRHSSDQI PTTLGNNGND APKSIAVPVS NYTTPSYSPS KQELRSSITV PPSPSRFKIP HSSSVKRVLT
501: AYVTKNEPRL KNLPLERSSR SSSSERLSLE KCMKESLNVS NLDPGI
101: SNAITNLCAT LFGQLWRLEP LPTEKKEMWR REMEWLLCVS DHIVEMTPTW QTFPDGTKLE IMTCRPRSDL YVNLPALRKL DNMLLEILDS FEETEFWYVD
201: QGIMAHESAA DGSSSFRKSF QRQEDKWWLP VPRVSPGGLQ ENSRKQLQHK RDCTNQILKA AMAINSITLA DMEIPESYLE SLPRKGRSCL GDLIYRYISS
301: DQFSPECLLD CLDLSSEHQA IEIANRVESS IYLWHKRTNS KPATNTKTSW EMVKELMVDA DKLELMADRA ESLLLSLKQR FPGLPQTALD MSKIQYNKDI
401: GKSILESYSR VLESLAFNIV ARIDDLLFVD DLTRHSSDQI PTTLGNNGND APKSIAVPVS NYTTPSYSPS KQELRSSITV PPSPSRFKIP HSSSVKRVLT
501: AYVTKNEPRL KNLPLERSSR SSSSERLSLE KCMKESLNVS NLDPGI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.