Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77402 | Canola | nucleus | 92.16 | 92.51 |
| Bra015068.1-P | Field mustard | nucleus | 92.16 | 92.51 |
| CDY46477 | Canola | nucleus | 91.78 | 92.13 |
| CDY03297 | Canola | mitochondrion | 90.82 | 90.82 |
| Bra036671.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 87.57 | 90.69 |
| CDY39783 | Canola | mitochondrion | 90.63 | 90.29 |
| Bra013249.1-P | Field mustard | nucleus, plastid | 89.1 | 89.96 |
| CDY03296 | Canola | nucleus | 56.41 | 89.12 |
| AT4G13240.1 | Thale cress | nucleus | 80.88 | 81.82 |
| CDX93028 | Canola | nucleus | 65.58 | 72.36 |
| Solyc07g032730.2.1 | Tomato | nucleus | 51.05 | 65.28 |
| VIT_09s0002g04310.t01 | Wine grape | cytosol | 55.45 | 63.88 |
| AT1G79860.1 | Thale cress | nucleus | 57.74 | 58.64 |
| PGSC0003DMT400040374 | Potato | nucleus | 51.05 | 56.81 |
| KRH39304 | Soybean | nucleus | 56.21 | 56.54 |
| KRH48369 | Soybean | mitochondrion | 60.61 | 56.41 |
| AT5G19560.4 | Thale cress | mitochondrion | 53.73 | 54.88 |
| PGSC0003DMT400001020 | Potato | nucleus | 57.74 | 54.41 |
| Solyc12g007150.1.1 | Tomato | nucleus | 56.98 | 53.69 |
| AT1G52240.1 | Thale cress | nucleus | 54.88 | 52.85 |
| AT3G16130.1 | Thale cress | nucleus | 49.52 | 48.14 |
| AT4G00460.2 | Thale cress | nucleus | 35.37 | 39.11 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 33.84 | 38.23 |
| AT4G38430.1 | Thale cress | nucleus | 39.01 | 37.23 |
| AT5G02010.1 | Thale cress | nucleus | 37.67 | 36.08 |
| AT1G01700.4 | Thale cress | nucleus | 34.23 | 34.76 |
| AT3G55660.1 | Thale cress | cytosol, plastid | 36.9 | 33.33 |
| AT5G05940.1 | Thale cress | cytosol | 38.62 | 33.06 |
| AT1G31650.1 | Thale cress | mitochondrion, nucleus | 33.08 | 30.03 |
Protein Annotations
| Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | PDB:2NTX | PDB:2NTY | PDB:2WBL | EntrezGene:822058 |
| ProteinID:AEE76930.1 | ArrayExpress:AT3G24620 | EnsemblPlantsGene:AT3G24620 | RefSeq:AT3G24620 | TAIR:AT3G24620 | RefSeq:AT3G24620-TAIR-G |
| EnsemblPlants:AT3G24620.1 | TAIR:AT3G24620.1 | Symbol:ATROPGEF8 | ProteinID:BAB02015.1 | EMBL:DQ446693 | GO:GO:0003674 |
| GO:GO:0005085 | GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0042802 | GO:GO:0065009 | InterPro:IPR005512 |
| RefSeq:NP_189105.1 | PFAM:PF03759 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007616 | PO:PO:0009046 |
| PO:PO:0025195 | PO:PO:0025281 | InterPro:PRONE_dom | PFscan:PS51334 | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF10 |
| UniProt:Q9LV40 | InterPro:RopGEF | UniParc:UPI00000A8FEE | SEG:seg | : | : |
Description
ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
Coordinates
chr3:-:8980400..8982903
Molecular Weight (calculated)
58744.4 Da
IEP (calculated)
5.341
GRAVY (calculated)
-0.619
Length
523 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.