Factsheet for Bra036671.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010128.1-P
Bra029240.1-P
Bra035878.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24620.1	Bra010128.1-P	AT5G62880.1	22500990
AT3G24620.1	Bra029240.1-P	AT5G62880.1	22500990
AT3G24620.1	Bra035878.1-P	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03296	Canola	nucleus	63.76	97.28
CDY39783	Canola	mitochondrion	99.6	95.81
CDY03297	Canola	mitochondrion	99.01	95.6
Bra015068.1-P	Field mustard	nucleus	91.09	88.29
AT3G24620.1	Thale cress	nucleus	90.69	87.57
Bra013249.1-P	Field mustard	nucleus, plastid	89.31	87.07
Solyc07g032730.2.1	Tomato	nucleus	52.28	64.55
VIT_09s0002g04310.t01	Wine grape	cytosol	57.23	63.66
Bra020048.1-P	Field mustard	nucleus	54.65	55.87
Bra021162.1-P	Field mustard	nucleus	47.92	55.76
KRH39304	Soybean	nucleus	57.03	55.38
KRH48369	Soybean	mitochondrion	60.99	54.8
Bra006510.1-P	Field mustard	cytosol	52.67	54.51
Bra003536.1-P	Field mustard	nucleus	55.25	54.39
PGSC0003DMT400001020	Potato	nucleus	59.21	53.87
Solyc12g007150.1.1	Tomato	nucleus	59.01	53.69
PGSC0003DMT400040374	Potato	nucleus	49.51	53.19
Bra002246.1-P	Field mustard	plastid	52.48	51.26
Bra018956.1-P	Field mustard	nucleus	54.06	50.93
Bra030396.1-P	Field mustard	nucleus	53.86	50.65
Bra027189.1-P	Field mustard	nucleus	50.69	48.3
Bra004945.1-P	Field mustard	nucleus, plastid	35.25	38.7
Bra037342.1-P	Field mustard	cytosol	35.84	37.95
Bra000971.1-P	Field mustard	nucleus	35.84	37.87
Bra015010.1-P	Field mustard	cytosol	40.2	37.11
Bra007183.1-P	Field mustard	cytosol, plastid	39.21	34.68
Bra009621.1-P	Field mustard	nucleus	38.42	34.64
Bra009152.1-P	Field mustard	cytosol, plastid	40.2	34.12
Bra005323.1-P	Field mustard	nucleus	32.67	32.93
Bra005322.1-P	Field mustard	nucleus	22.38	28.83
Bra021161.1-P	Field mustard	nucleus	2.18	8.27

Protein Annotations

EnsemblPlants:Bra036671.1	EnsemblPlants:Bra036671.1-P	EnsemblPlantsGene:Bra036671	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	PFAM:PF03759	PFscan:PS51334
SEG:seg	UniParc:UPI00025420B6	UniProt:M4F6G1	MapMan:27.4.3.1	:	:

Description

AT3G24620 (E=1e-237) ATROPGEF8, ROPGEF8 | ROPGEF8; Rho guanyl-nucleotide exchange factor

Coordinates

chrA09:+:5723788..5725881

Molecular Weight (calculated)

56593.0 Da

IEP (calculated)

6.101

GRAVY (calculated)

-0.600

Length

505 amino acids

Sequence
(BLAST)

001: MFHSLSTRQQ QQQQPQTLVV ENGDSHLVES KTPESQNSDC FTESPVESMP PMISPLTRPG KRPERQQADT ELKDRFAKLL LGEDMSGGGK GVSSALALSN
101: AITNLAASIF GEQTKLQPMP QDRQARWKKE IEWLLSVTDH IVEFVPSQQT SKDGVCTEIM VTRQRGDLLM NIPALRKLDA MLIDTLDNFR GHNEFYYVSR
201: DSEEGKQASN ARSNDKWWLP PVKVPPGGLS EPARKMLYFQ KDSVTQVQKA AMAINAQVLS EMAIPESYID SLPKNGRSSL GDSIYKSITE EWFDPAQFLS
301: MLDLSTEHKV LDLKNRIEAS VVIWKRKLHL KDNKSSWGSA VSLGKRELFE ERAETILILL KQKFPGLPQS SLDISKIQFN KDVGQAVLES YSRILESLAY
401: TVMSRIEDVL YTDSLAQKQA LLAEADAGRT SETDSESAGS SHSGEETEKL DPHYSKTLLD FMGWSDNSSK GGDKPTKSPS LTPKKLSYLE KLENFNGFRS
501: PKDRH

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.