Factsheet for Bra005322.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005323.1-P	Field mustard	nucleus	100.0	78.24
CDY31706	Canola	cytosol	98.72	76.94
PGSC0003DMT400075550	Potato	extracellular	22.45	42.72
KRH39757	Soybean	mitochondrion, nucleus	55.87	38.9
KRH76428	Soybean	mitochondrion, nucleus	55.61	38.72
KRH07751	Soybean	cytosol, nucleus, plastid	54.59	38.56
Solyc08g075120.2.1	Tomato	extracellular	55.36	38.54
GSMUA_Achr8P14490_001	Banana	cytosol	18.88	38.54
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	54.59	38.01
KRH07240	Soybean	cytosol, nucleus, plastid	53.32	37.59
GSMUA_Achr8P14480_001	Banana	nucleus	22.96	34.75
KXG30927	Sorghum	cytosol	44.64	32.41
Os02t0702600-02	Rice	cytosol	44.64	32.23
TraesCS6B01G298000.1	Wheat	cytosol	44.64	32.23
TraesCS6A01G270900.1	Wheat	cytosol	44.39	32.04
TraesCS6D01G244200.1	Wheat	cytosol	44.39	32.04
Zm00001d017755_P002	Maize	cytosol	44.13	31.98
Zm00001d051553_P004	Maize	cytosol	43.11	31.3
GSMUA_Achr11P...	Banana	cytosol	25.51	29.94
GSMUA_Achr11P...	Banana	cytosol	13.78	29.67
Solyc12g096220.1.1	Tomato	nucleus	48.47	26.1
HORVU6Hr1G068660.4	Barley	nucleus	38.78	25.12
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	55.61	23.9
Bra020048.1-P	Field mustard	nucleus	29.08	23.08
Bra006510.1-P	Field mustard	cytosol	28.57	22.95
Bra002246.1-P	Field mustard	plastid	30.1	22.82
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	28.83	22.38
Bra021162.1-P	Field mustard	nucleus	24.74	22.35
Bra003536.1-P	Field mustard	nucleus	29.08	22.22
Bra013249.1-P	Field mustard	nucleus, plastid	29.08	22.01
Bra027189.1-P	Field mustard	nucleus	28.57	21.13
Bra015068.1-P	Field mustard	nucleus	28.06	21.11
Bra015010.1-P	Field mustard	cytosol	29.34	21.02
Bra037342.1-P	Field mustard	cytosol	25.26	20.75
Bra000971.1-P	Field mustard	nucleus	25.26	20.71
Bra018956.1-P	Field mustard	nucleus	28.32	20.71
HORVU6Hr1G041610.18	Barley	plastid	38.78	20.27
Bra030396.1-P	Field mustard	nucleus	27.3	19.93
Bra009152.1-P	Field mustard	cytosol, plastid	29.85	19.66
Bra009621.1-P	Field mustard	nucleus	28.06	19.64
Bra004945.1-P	Field mustard	nucleus, plastid	22.96	19.57
Bra007183.1-P	Field mustard	cytosol, plastid	27.81	19.09
Bra021161.1-P	Field mustard	nucleus	2.55	7.52
CDY69871	Canola	cytosol	2.04	7.14

Protein Annotations

Gene3D:1.20.58.2010	MapMan:35.1	EnsemblPlantsGene:Bra005322	EnsemblPlants:Bra005322.1	EnsemblPlants:Bra005322.1-P	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	UniProt:M4CM84	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101
PANTHER:PTHR33101:SF2	InterPro:RopGEF	UniParc:UPI0002547D4E	SEG:seg	:	:

Description

AT1G31650 (E=7e-068) ATROPGEF14, ROPGEF14 | ROPGEF14; Rho guanyl-nucleotide exchange factor

Coordinates

chrA05:-:4825068..4826940

Molecular Weight (calculated)

44109.6 Da

IEP (calculated)

6.434

GRAVY (calculated)

-0.607

Length

392 amino acids

Sequence
(BLAST)

001: MTYDGLEACF NNNQSLQEES GRSRGNECLT DSLDDDAFSS CSSSKDTSES FSSKWLPKKN GKHISNEWDY ERSPKHFYSK EERPGYTLCS SDVEAMKEKF
101: SKLLLGGDLT GGRKGVQTAL ALSNAISHLA NSVFGELWKL EPLSEDNKQR WRREMDWLLS PCSHMIELVP SKLDDKNGRS LESGKTSLGD ELFRMLASES
201: ASVDEIFVSL RLRTEHSALE TVNRLEAAIY AWKEKFTEQR SSGKWSLVRD SLSEITRIEP LINKAERLNG QIKSKYSNLP HSFLDATKIQ YGKDIGHAIL
301: EAYSRILASL AFRILSRIRE ILQEDALSNP SSPATPSCFS GSNDLFRTPE RLLVSSRLRH SLIHDINKAD DGTRNSSDFL NTDPRGSSFS LI

Best Arabidopsis Sequence Match ( AT1G31650.1 )
(BLAST)

001: MMLMRRRLAC CSREREISID FDEHEQDKMI TYYGLETCII NNQSYEEESG TSRGDGCLTD SLDDDAFSSC SSSKDASSSF SSKWLPMKND EHSCDGLNLS
101: GRSQHFDAKE KKKQGYGSSQ HFDAKEKPGY VYCHLDVEAM KEKFSKLLLG EDVTGGCKGV QVALALSNAV THLATSIFGE LWKLEPLCEE KKQKWRREMD
201: WLLSPTNYMI ELVPSKQNDA NGRSLEIMTP KARADIHMNL PALQKLDSML IETLDSMVNT EFWYSEIGSR AEGKNKSTSE SKRWWLPSPQ VPKPGLSNSG
301: RKKLLDKGKV VYQVFKATKA INENILLEMP VPIVIKEAIP KSGKNSLGDE LYKMLAVESA TVDEIFISLN LGTEHAALET VNKLESAMFA WKERITEQGS
401: NGKSPVRASW SFAKDPLSEI GRNESLLNRA EALRTQIKSK HPNLPHSFLD ATKIQYDKDI GHAVLEAYSR TLANLAFRIL SRMGEILKED SLSNPNSPAP
501: PSCFPSSRDP YRTPERPLLS SRVRHSLTDD MNKADGTETG LDFLFADAKA SNSVNTTPSR SSRLWCLSKV PSDTSP

Arabidopsis Description

ROPGEF14Rop guanine nucleotide exchange factor 14 [Source:UniProtKB/Swiss-Prot;Acc:Q56WM6]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.