CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39757	Soybean	mitochondrion, nucleus	92.9	92.9
KRH07751	Soybean	cytosol, nucleus, plastid	75.31	76.4
KRH07240	Soybean	cytosol, nucleus, plastid	73.0	73.92
CDY69871	Canola	cytosol	14.56	73.21
Solyc08g075120.2.1	Tomato	extracellular	64.83	64.83
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	64.12	64.12
CDY12411	Canola	cytosol	14.56	63.57
CDY62299	Canola	cytosol, nucleus, plastid	60.75	61.07
CDY12303	Canola	nucleus	60.92	60.92
AT1G31650.1	Thale cress	mitochondrion, nucleus	62.17	60.76
CDX84189	Canola	cytosol	52.22	59.88
Bra005323.1-P	Field mustard	nucleus	53.11	59.68
CDY31706	Canola	cytosol	53.11	59.44
GSMUA_Achr8P14480_001	Banana	nucleus	26.11	56.76
GSMUA_Achr11P...	Banana	cytosol	33.57	56.59
Bra005322.1-P	Field mustard	nucleus	38.72	55.61
KXG30927	Sorghum	cytosol	50.44	52.59
GSMUA_Achr8P14490_001	Banana	cytosol	17.76	52.08
Zm00001d017755_P002	Maize	cytosol	49.73	51.76
Os02t0702600-02	Rice	cytosol	49.56	51.38
Zm00001d051553_P004	Maize	cytosol	48.85	50.93
PGSC0003DMT400075550	Potato	extracellular	18.47	50.49
TraesCS6B01G298000.1	Wheat	cytosol	48.67	50.46
TraesCS6D01G244200.1	Wheat	cytosol	48.49	50.28
TraesCS6A01G270900.1	Wheat	cytosol	48.49	50.28
GSMUA_Achr11P...	Banana	cytosol	15.1	46.7
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	69.63	42.98
HORVU6Hr1G068660.4	Barley	nucleus	44.76	41.65
Solyc12g096220.1.1	Tomato	nucleus	53.29	41.21
KRH15734	Soybean	cytosol	18.83	40.77
KRG94270	Soybean	mitochondrion	7.46	37.84
KRH44350	Soybean	nucleus	30.37	37.67
KRH65102	Soybean	nucleus	31.97	37.42
KRH23439	Soybean	nucleus	34.81	36.7
KRH09881	Soybean	cytosol	34.64	36.59
KRH48179	Soybean	nucleus	23.8	35.73
KRH40457	Soybean	cytosol	31.79	34.96
KRH00737	Soybean	nucleus, plastid	31.79	34.96
KRH39304	Soybean	nucleus	31.62	34.23
KRH73109	Soybean	nucleus	33.75	34.11
HORVU6Hr1G041610.18	Barley	plastid	44.76	33.6
KRH29101	Soybean	cytosol, plastid	33.39	33.22
KRH47282	Soybean	nucleus	31.62	33.09
KRH24128	Soybean	cytosol	33.21	32.92
KRH48369	Soybean	mitochondrion	32.68	32.74
KRG97804	Soybean	nucleus	34.46	32.72
KRH31060	Soybean	nucleus	34.64	32.61
KRH75747	Soybean	nucleus	32.86	31.62
KRH15022	Soybean	nucleus	31.44	31.55
KRH00070	Soybean	nucleus	34.1	31.32
KRH65969	Soybean	nucleus	33.39	31.13
KRH49210	Soybean	nucleus, plastid	34.46	27.13

Protein Annotations

Gene3D:1.20.58.2010	EntrezGene:100818685	MapMan:27.4.3.1	EMBL:ACUP02000611	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G152100
GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0065009	InterPro:IPR005512	UniProt:K7K403	ProteinID:KRH76427.1	EnsemblPlants:KRH76428	ProteinID:KRH76428
ProteinID:KRH76428.1	ProteinID:KRH76429.1	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101
PANTHER:PTHR33101:SF2	InterPro:RopGEF	UniParc:UPI00023378E2	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:48886353..48894765

Molecular Weight (calculated)

63306.3 Da

IEP (calculated)

5.898

GRAVY (calculated)

-0.462

Length

563 amino acids

Sequence
(BLAST)

001: MLMMRKRLAC CTRERKFSID HDEQERIMTY NGLESCMLNN QSYEDESRTS RGDECITDSF DDDNSSSSSS KDAFGSFSSK CLTMKRDDKG LEEWELSESP
101: QHFCVKEKPY AIQHSDIEAM KDKFSKLLLG EDVTGGTKGL STALALSNAI TNLAVTVFGE LWKLEPLSEE RKRKWQREMD WLLSPTNYMV ELVPAKQSSS
201: NGGIFEIMTP KARADIHMNL PALQKLDSML IETLDLMMNT EFWYAEGGSQ AEGRRDTNSQ HSKRWWLPSP QVPKTGLSDT ERKRLLHQGR VVRQVFKAAK
301: AINESVLLEM PVPSIIKDAL AKSGKANLGQ ELHKVLMAES SSGEDMLKYL NLKSEHLVLE TVNRLEAAIF SWKERIAEQV SGKSPVRSSW SPFVKDPMSE
401: VDKLELLLDR AETLLQLIKI RYPNLPQTFL DATKVQYGKD IGHSILEAYS RVLGNLAFSI VSRIGDVLQE DSLSNPNSPV SINCSPEINL SQTWVVGSHI
501: RQSLLDKINK ADGQYCDSSC YTSDLELSSI DTKSSSVIVT PNRSTVWCIS REACKSVSPQ NSP

Best Arabidopsis Sequence Match ( AT1G31650.1 )
(BLAST)

001: MMLMRRRLAC CSREREISID FDEHEQDKMI TYYGLETCII NNQSYEEESG TSRGDGCLTD SLDDDAFSSC SSSKDASSSF SSKWLPMKND EHSCDGLNLS
101: GRSQHFDAKE KKKQGYGSSQ HFDAKEKPGY VYCHLDVEAM KEKFSKLLLG EDVTGGCKGV QVALALSNAV THLATSIFGE LWKLEPLCEE KKQKWRREMD
201: WLLSPTNYMI ELVPSKQNDA NGRSLEIMTP KARADIHMNL PALQKLDSML IETLDSMVNT EFWYSEIGSR AEGKNKSTSE SKRWWLPSPQ VPKPGLSNSG
301: RKKLLDKGKV VYQVFKATKA INENILLEMP VPIVIKEAIP KSGKNSLGDE LYKMLAVESA TVDEIFISLN LGTEHAALET VNKLESAMFA WKERITEQGS
401: NGKSPVRASW SFAKDPLSEI GRNESLLNRA EALRTQIKSK HPNLPHSFLD ATKIQYDKDI GHAVLEAYSR TLANLAFRIL SRMGEILKED SLSNPNSPAP
501: PSCFPSSRDP YRTPERPLLS SRVRHSLTDD MNKADGTETG LDFLFADAKA SNSVNTTPSR SSRLWCLSKV PSDTSP

Arabidopsis Description

ROPGEF14Rop guanine nucleotide exchange factor 14 [Source:UniProtKB/Swiss-Prot;Acc:Q56WM6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.