CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47282	Soybean	nucleus	94.71	79.93
GSMUA_Achr5P06900_001	Banana	cytosol	64.1	69.12
GSMUA_Achr6P14020_001	Banana	cytosol	64.98	68.45
GSMUA_Achr2P09130_001	Banana	cytosol	57.27	66.5
KRH09881	Soybean	cytosol	77.97	66.42
KRH23439	Soybean	nucleus	77.53	65.92
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	62.11	65.43
Solyc06g066650.2.1	Tomato	nucleus	65.2	63.11
CDX67930	Canola	nucleus	67.18	62.63
PGSC0003DMT400042632	Potato	nucleus	64.32	62.39
OQU84790	Sorghum	cytosol	60.13	62.05
TraesCS6A01G196000.1	Wheat	cytosol	59.47	61.93
Solyc03g120650.2.1	Tomato	cytosol	66.96	60.56
AT1G79860.1	Thale cress	nucleus	68.5	60.39
PGSC0003DMT400006531	Potato	cytosol	66.74	60.36
Bra003536.1-P	Field mustard	nucleus	67.4	59.65
Solyc12g044270.1.1	Tomato	nucleus	67.4	58.29
GSMUA_Achr3P03410_001	Banana	nucleus	64.54	57.91
TraesCSU01G211800.1	Wheat	cytosol	40.97	57.06
CDX79407	Canola	cytosol, endoplasmic reticulum, nucleus	67.4	56.98
Zm00001d053307_P002	Maize	cytosol, plastid	60.13	56.52
GSMUA_Achr3P15410_001	Banana	nucleus	60.79	55.65
TraesCSU01G217800.1	Wheat	cytosol	41.63	55.59
TraesCSU01G211700.1	Wheat	cytosol	41.63	55.59
PGSC0003DMT400097197	Potato	nucleus	68.06	54.88
KRH39304	Soybean	nucleus	62.56	54.62
HORVU6Hr1G050860.4	Barley	mitochondrion	60.13	54.27
KRH48369	Soybean	mitochondrion	65.86	53.2
TraesCS6D01G183300.1	Wheat	mitochondrion	59.47	53.05
Os02t0272300-01	Rice	plasma membrane	59.69	52.83
Zm00001d016001_P002	Maize	mitochondrion	60.13	51.12
KRH15734	Soybean	cytosol	23.35	40.77
KRH65102	Soybean	nucleus	40.31	38.05
KRH29101	Soybean	cytosol, plastid	46.26	37.1
KRH24128	Soybean	cytosol	46.04	36.8
KRH00737	Soybean	nucleus, plastid	40.75	36.13
KRH73109	Soybean	nucleus	44.27	36.09
KRG94270	Soybean	mitochondrion	8.81	36.04
KRH00070	Soybean	nucleus	48.02	35.56
KRH40457	Soybean	cytosol	39.87	35.35
KRH48179	Soybean	nucleus	29.07	35.2
KRG97804	Soybean	nucleus	44.71	34.23
KRH31060	Soybean	nucleus	44.93	34.11
KRH65969	Soybean	nucleus	45.37	34.11
KRH75747	Soybean	nucleus	43.83	34.02
KRH15022	Soybean	nucleus	41.19	33.33
KRH07240	Soybean	cytosol, nucleus, plastid	37.44	30.58
KRH76428	Soybean	mitochondrion, nucleus	37.67	30.37
KRH49210	Soybean	nucleus, plastid	47.8	30.35
KRH07751	Soybean	cytosol, nucleus, plastid	36.78	30.09
KRH39757	Soybean	mitochondrion, nucleus	36.78	29.66

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	EMBL:ACUP02004927	EnsemblPlantsGene:GLYMA_08G204900	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	UniProt:I1KV70
InterPro:IPR005512	EnsemblPlants:KRH44350	ProteinID:KRH44350	ProteinID:KRH44350.1	PFAM:PF03759	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	InterPro:RopGEF	UniParc:UPI000294D3F2	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:16601889..16605064

Molecular Weight (calculated)

51323.7 Da

IEP (calculated)

5.294

GRAVY (calculated)

-0.660

Length

454 amino acids

Sequence
(BLAST)

001: MVQEMEQMKE RFAKLLLGED MSGGGKGVSS ALALSNAFTN LAAAVFGEQK RLEPMPPERK ARWRKEIDWL LSVTDYIVEM VPVQQKNKDG STMEVMTTRQ
101: RTDLHMNIPA LRKLDTMLID TLDNFKDQNE FYYVSKDAED SDRNNDTKWW LPTPKVPANG LSDAARRFVQ YQKDCVNQVL KAAMAINAQT LSEMEIPESY
201: IESLPKNGRS SLGDLIYRSI TDDFFDPDQL LSAMDMSSEH KIVDLKDRIE ASIVIWRRKM NQKDSSKSAW GSAVSMEKRE IFEDRAETIL LLLKHRFPGT
301: PQSALDISKI QFNRDVGHAV LESYSRILES LAFTVLSRIE DVLLADQQTQ NPSHSGTKSS ISRNPVPKPE KSPTPTPKEE VDKSGSEAMT LSDFMGWNND
401: QGDSDAKKDH FADSDDFDKN IDNGKPQKLP NVVTDKKVSY LETLGGMRSP TSRH

Best Arabidopsis Sequence Match ( AT1G79860.1 )
(BLAST)

001: MVRASEQEQE TYRSRLFNFK WRNNDNNSAT RHNKSLSVET GLDEAATGSH DAEPLTIIHP SQGPPLSRSA ADEAVLAALA ASQARERQLL ADMEQMKERF
101: SKLLLGEDNS GGGKGVSSAL ALSNAITNLA ASVFGEQRRL EPMPAERRAR WRKEIDWLLS VTDYVVEFAP SQQKNKDGTN MEIMTTRQRT DLHMNIPALK
201: KLDAMLIDCL ENFKDQSEFS YISKDSPDLD GKRNDEKWWI PTVKVPPDGL SEASRRFLQY QKDCVNQVLK AAMAINAQVL FEMEIPESYI DSLPKNGRAS
301: LGDQMYKNIT VDFFDPDQFL SSMDMSSEHK IVDLKNRIEA SIIIWKRKMV YKDNKSSAPW ASGVSLEKRE VFEERAETIL LILKQRYPGI SQSSLDISKI
401: QFNEDVGQAV LESYSRILES LAYTVLSRID DVLEADRAGN KRNTPLEAEE ETLVGSMTLS DFMGWDFDQA ANAELESKKD LPDDPLIKEK LSVVTTKKTS
501: YLETLGGVKS PTARH

Arabidopsis Description

ROPGEF12Rop guanine nucleotide exchange factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA89]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.