CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G196000.1	Wheat	cytosol	90.23	91.06
TraesCSU01G211800.1	Wheat	cytosol	65.91	88.96
Zm00001d053307_P002	Maize	cytosol, plastid	97.27	88.61
TraesCSU01G217800.1	Wheat	cytosol	67.05	86.76
TraesCSU01G211700.1	Wheat	cytosol	67.05	86.76
HORVU6Hr1G050860.4	Barley	mitochondrion	91.14	79.72
Zm00001d016001_P002	Maize	mitochondrion	96.14	79.21
TraesCS6D01G183300.1	Wheat	mitochondrion	90.45	78.19
Os02t0272300-01	Rice	plasma membrane	90.23	77.39
GSMUA_Achr6P14020_001	Banana	cytosol	65.0	66.36
Solyc07g032730.2.1	Tomato	nucleus	58.18	62.59
KRH44350	Soybean	nucleus	62.05	60.13
Solyc06g066650.2.1	Tomato	nucleus	62.5	58.64
GSMUA_Achr3P03410_001	Banana	nucleus	66.82	58.1
PGSC0003DMT400042632	Potato	nucleus	61.36	57.69
Solyc03g120650.2.1	Tomato	cytosol	62.73	54.98
PGSC0003DMT400006531	Potato	cytosol	62.27	54.58
Solyc12g044270.1.1	Tomato	nucleus	63.18	52.95
CDY58963	Canola	cytosol	44.09	52.15
CDY44926	Canola	nucleus	58.41	52.02
Bra020048.1-P	Field mustard	nucleus	58.41	52.02
KRH23439	Soybean	nucleus	62.73	51.69
CDY42277	Canola	nucleus	57.95	51.62
KRH09881	Soybean	cytosol	62.27	51.41
AT5G19560.4	Thale cress	mitochondrion	59.77	51.37
OQU87589	Sorghum	nucleus	60.0	51.06
PGSC0003DMT400040374	Potato	nucleus	54.32	50.85
KRH47282	Soybean	nucleus	62.05	50.74
Bra006510.1-P	Field mustard	cytosol	55.91	50.41
CDX88884	Canola	cytosol, plastid	55.91	50.41
KRH39304	Soybean	nucleus	59.32	50.19
CDX92519	Canola	plastid	55.91	49.5
PGSC0003DMT400097197	Potato	nucleus	63.18	49.38
Solyc12g007150.1.1	Tomato	nucleus	62.05	49.19
KRH48369	Soybean	mitochondrion	62.5	48.93
CDX70882	Canola	cytosol	56.14	48.91
PGSC0003DMT400001020	Potato	nucleus	61.36	48.65
VIT_11s0016g03740.t01	Wine grape	nucleus	60.68	48.11
EES19937	Sorghum	mitochondrion	60.0	48.0
Bra002246.1-P	Field mustard	plastid	55.91	47.58
KXG33101	Sorghum	mitochondrion	57.27	45.08
EES11256	Sorghum	nucleus	38.18	35.67
EES03886	Sorghum	cytosol	43.64	35.23
EER99384	Sorghum	nucleus, plastid	36.82	34.99
EER91970	Sorghum	plastid	38.64	34.76
EER99291	Sorghum	nucleus, plastid	43.64	34.35
EES18335	Sorghum	cytosol	42.73	32.08
KXG30927	Sorghum	cytosol	37.05	30.19

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	UniProt:A0A1Z5RM15	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
EnsemblPlants:OQU84790	ProteinID:OQU84790	ProteinID:OQU84790.1	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334
PANTHER:PTHR33101	PANTHER:PTHR33101:SF16	InterPro:RopGEF	EnsemblPlantsGene:SORBI_3004G123100	UniParc:UPI000B8B996C	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:13838770..13841653

Molecular Weight (calculated)

49706.5 Da

IEP (calculated)

5.204

GRAVY (calculated)

-0.439

Length

440 amino acids

Sequence
(BLAST)

001: MKEKFAKLLL GEDMSGTGKG VASALALSNA VTNLAASVFG EHRKLEPMAP DTKERWKREV GWLLSVTDHI VEFVPTRQTA ENGTTMEIMS TAQRRDLAMN
101: IPALRKLDAM LIGYMDNFVD QTEFWYEKGG DNKRDDDKWW MPTVKVPSEG LSDVTRKWLQ YQKECVNQVL KAAMAINAQV LVEMEIPEIY IESLPKKGKT
201: SLGDAIYRSI TEDTFDPLEF LAGMDLSTEH KVLDLKNRIE ASTVIWKRKM QTKDSKSSWS SIVSFEKREQ FEERAETILH LLKIQFPGTP QSQLDISKIQ
301: YNRDVGYALL ESYSRVLESL AYSVMSRIED VLSADAAAQN LTATEAARRM MESAELPAAR KLDAKEELEK LNEAPASMTL FDFMGWHFDQ DELMKRREDG
401: TLDADGEAML LKKAPSMAPK KFSYVDSLAA GGMRSPSARH

Best Arabidopsis Sequence Match ( AT1G52240.1 )
(BLAST)

001: MVKAMEQEQE TYKSRLFHFK NMNENSASRH VKSWSSDCAM RMDGSDNLDD DDNDMMMFRS QPGKCGSVDR PSLPIGGVTP NRNDKLPRVS SSDSMEALII
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS

Arabidopsis Description

ROPGEF11ROPGEF11 [Source:UniProtKB/TrEMBL;Acc:A0A178W8V0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.