Factsheet for VIT_11s0016g03740.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P06900_001	Banana	cytosol	54.59	71.97
VIT_09s0002g04310.t01	Wine grape	cytosol	57.12	69.82
GSMUA_Achr6P14020_001	Banana	cytosol	54.05	69.61
GSMUA_Achr2P09130_001	Banana	cytosol	47.21	67.01
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	50.99	65.66
GSMUA_Achr3P03410_001	Banana	nucleus	58.38	64.03
GSMUA_Achr3P15410_001	Banana	nucleus	54.41	60.89
TraesCS6A01G196000.1	Wheat	cytosol	47.75	60.78
OQU84790	Sorghum	cytosol	48.11	60.68
Zm00001d053307_P002	Maize	cytosol, plastid	49.73	57.14
TraesCSU01G211800.1	Wheat	cytosol	32.97	56.13
CDY44926	Canola	nucleus	49.37	55.47
Bra020048.1-P	Field mustard	nucleus	49.37	55.47
CDY42277	Canola	nucleus	49.19	55.26
TraesCSU01G217800.1	Wheat	cytosol	33.69	55.0
TraesCSU01G211700.1	Wheat	cytosol	33.69	55.0
CDY58963	Canola	cytosol	36.76	54.84
TraesCS6D01G183300.1	Wheat	mitochondrion	49.91	54.42
AT5G19560.4	Thale cress	mitochondrion	50.09	54.3
HORVU6Hr1G050860.4	Barley	mitochondrion	49.19	54.27
CDX92519	Canola	plastid	48.47	54.12
Bra006510.1-P	Field mustard	cytosol	47.21	53.69
CDX88884	Canola	cytosol, plastid	47.21	53.69
Os02t0272300-01	Rice	plasma membrane	49.55	53.61
Bra002246.1-P	Field mustard	plastid	48.47	52.03
Zm00001d016001_P002	Maize	mitochondrion	49.73	51.69
CDX70882	Canola	cytosol	47.03	51.68
VIT_18s0001g00550.t01	Wine grape	cytosol	37.66	39.29
VIT_13s0019g02710.t01	Wine grape	nucleus	40.9	38.09
VIT_03s0038g03620.t01	Wine grape	cytosol	40.0	37.82
VIT_15s0046g02530.t01	Wine grape	plastid	34.23	37.7
VIT_08s0007g01380.t01	Wine grape	nucleus	39.28	35.8
VIT_08s0007g01390.t01	Wine grape	nucleus	38.02	35.46
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	33.69	20.5

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	EntrezGene:100260990	MapMan:27.4.3.1	ProteinID:CCB51511	ProteinID:CCB51511.1
UniProt:F6HH15	EMBL:FN595756	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	PFAM:PF03759	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	InterPro:RopGEF	TIGR:TC62572	UniParc:UPI00021087A4
ArrayExpress:VIT_11s0016g03740	EnsemblPlantsGene:VIT_11s0016g03740	EnsemblPlants:VIT_11s0016g03740.t01	RefSeq:XP_002280831	RefSeq:XP_002280831.1	RefSeq:XP_010656310.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:3057526..3060476

Molecular Weight (calculated)

61789.2 Da

IEP (calculated)

6.760

GRAVY (calculated)

-0.578

Length

555 amino acids

Sequence
(BLAST)

001: MMARALDGIQ KSKSFRFKKM LESPGRHVRS LLLENDDGGA GDDRVQFRSQ GSKTAGDRPL ELHQTGFSLH QSSNSAQSSN SAQSSNSAQP SHSSLRPGAS
101: HSQEVEQIRE RFAKLLLGED MSGRGTGVSS ALALSNAITN LAASVFGEQW KLEPMSAERK AMWRKDIDLL LSVADYIVEL VPSQQTAKDG TTMEVMVSRQ
201: RKDLLMNIPA LRKLDAMLIE HLDNFKGPNE FWYVSRDAED AGSREDDKWW LPRPKVPPNG LSDASRKWLQ FQKESVNQVL KAAMAINAQL LSEMEVPDDY
301: IESLPKNGRA SLGDSIYKSI TVEFFDPEQL LSTMDLSTDH KVLEFKNKIE ASIVIWKRKM NHKDGKSTWG SAVSLEKREL FEERAETILL LLKQRFPGLA
401: QSQLDTSKIQ FNRDVGQSIL ESYSRILESL AFTVMSRIED VMYADSLAQN PSLAQTGRKP SAVCLPLTGS TREETEKNPT ETQTPTSMTL SDFMGWHLMG
501: DTEPGRSSSG NSDDLKDDSG MLAGKLNKVA IHKKSNSYLD KLENLGGLRS PTSRH

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.