Factsheet for Bra020048.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44926	Canola	nucleus	99.39	99.39
Bra002246.1-P	Field mustard	plastid	87.04	83.17
AT5G19560.4	Thale cress	mitochondrion	84.82	81.84
Bra006510.1-P	Field mustard	cytosol	75.3	76.23
GSMUA_Achr2P09130_001	Banana	cytosol	48.38	61.13
GSMUA_Achr5P06900_001	Banana	cytosol	51.62	60.57
GSMUA_Achr6P14020_001	Banana	cytosol	52.83	60.56
TraesCS6A01G196000.1	Wheat	cytosol	52.23	59.17
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	51.21	58.7
OQU84790	Sorghum	cytosol	52.02	58.41
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	55.87	54.65
Zm00001d053307_P002	Maize	cytosol, plastid	53.24	54.45
TraesCSU01G211800.1	Wheat	cytosol	35.83	54.29
GSMUA_Achr3P03410_001	Banana	nucleus	54.45	53.16
Bra015068.1-P	Field mustard	nucleus	55.67	52.78
TraesCSU01G217800.1	Wheat	cytosol	36.23	52.65
TraesCSU01G211700.1	Wheat	cytosol	36.23	52.65
Os02t0272300-01	Rice	plasma membrane	54.66	52.63
Bra013249.1-P	Field mustard	nucleus, plastid	55.06	52.51
HORVU6Hr1G050860.4	Barley	mitochondrion	53.24	52.29
TraesCS6D01G183300.1	Wheat	mitochondrion	53.64	52.06
GSMUA_Achr3P15410_001	Banana	nucleus	51.62	51.41
Bra021162.1-P	Field mustard	nucleus	43.52	49.54
VIT_11s0016g03740.t01	Wine grape	nucleus	55.47	49.37
Zm00001d016001_P002	Maize	mitochondrion	53.24	49.25
Bra003536.1-P	Field mustard	nucleus	51.01	49.12
Bra018956.1-P	Field mustard	nucleus	51.01	47.01
Bra030396.1-P	Field mustard	nucleus	51.01	46.93
Bra027189.1-P	Field mustard	nucleus	46.56	43.4
Bra004945.1-P	Field mustard	nucleus, plastid	33.81	36.3
Bra000971.1-P	Field mustard	nucleus	33.81	34.94
Bra037342.1-P	Field mustard	cytosol	33.6	34.8
Bra015010.1-P	Field mustard	cytosol	38.06	34.37
Bra005323.1-P	Field mustard	nucleus	34.01	33.53
Bra007183.1-P	Field mustard	cytosol, plastid	38.06	32.92
Bra009621.1-P	Field mustard	nucleus	36.84	32.5
Bra009152.1-P	Field mustard	cytosol, plastid	37.45	31.09
Bra005322.1-P	Field mustard	nucleus	23.08	29.08
Bra021161.1-P	Field mustard	nucleus	1.82	6.77

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	EnsemblPlantsGene:Bra020048	EnsemblPlants:Bra020048.1	EnsemblPlants:Bra020048.1-P
GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0065009	InterPro:IPR005512	UniProt:M4DU55	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334
PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	InterPro:RopGEF	UniParc:UPI0002543284	SEG:seg	:

Description

AT5G19560 (E=5e-234) ATROPGEF10, ROPGEF10 | ROPGEF10 (ROP UANINE NUCLEOTIDE EXCHANGE FACTOR 10); Rho guanyl-nucleotide exchange factor

Coordinates

chrA02:+:4812438..4815205

Molecular Weight (calculated)

56554.1 Da

IEP (calculated)

5.474

GRAVY (calculated)

-0.647

Length

494 amino acids

Sequence
(BLAST)

001: MLDGLNSGNS SFSSRGDGRQ TPDHELAVHA TPSAQGTRRG NQNRISDMEV MKERFARLLL GEDMSGGSEG VSSALALSNA ITNLADSMFG EQMKLQPMYP
101: ETKEIWRKEL DWLLSVVDHI VQFVPSKQMA KNGAITEIMV TKQRDDLLMN IPALRKLDSV LLETLDNFKD QKDFWYVPRD VEDTENNGDW RRDDNWWLPV
201: VKVPSDGLSE ESRKLLHSQK DSVSQVLKAA TAINAVVLSE MHIPDNYIDS LPKNGKTSLG DFLYKNITDE YFDPDYFISF LELSTEHKVL DLKNRIEASM
301: VIWKRKMNQK EKDGKSQWGS SVSLEKRELF EVRAETILVM LKQQFPRIPQ SSLEISKIRN NKDVGQAILE SYSRVLENLA SKILSRIDDV LEADLLVQRQ
401: MMAEAERRSE SEGGYEYEES EKGLSAETPN SRKLSDFIGW RLSSDTKKHS SMSDIEFFYR TEQEKPMMKS PRALPKKLSY LSKLENMRST SERH

Best Arabidopsis Sequence Match ( AT5G19560.5 )
(BLAST)

001: MFDGRNSGHS SFSSRGDGMH TPEHELAGHA APSTRRGKQN RRSDMEVMKE RFAKLLLGED MSGGGTGETS ALALSNAITK LADSMFGEQM KLQPMYPETK
101: ENWRKEMGWL LSVIDHIVQF VPSRQMGKNG QFTEIMVTKQ RDDLLTNIPA LRKLDSVLLE TLDNFKDQKD FWYVPRDMED ADHNGDWRRD ENWWLPVVKV
201: PTDGLSEESR RWLQNQKDSV AQVLKAATAI NAHVLSEMHV PENYIDSLPK NGKTSLGDFL YKSITEESFD PDYFVSFLDL STEHKVLDLK NRIEASMVIW
301: KRKMCQKEKD GKSQWGSTVS LEKRELFEVR AETILVMLKQ QFPGIPQSSL EVSKIKNNKD VGQAILESYS RVLESLASKI MSRIEDVLEA DRLVQRQLMG
401: EAETRSESEA ESEYEETEKV VAAETPNSRK LSDFIGWRLS SDTKKHSSMS DIEFFHKVEQ EKEKPMMKSP RALPKKFSYL AKLENMRSPS DRH

Arabidopsis Description

ATROPGEF10ROP uanine nucleotide exchange factor 10 [Source:TAIR;Acc:AT5G19560]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.