Factsheet for Bra015068.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010128.1-P
Bra029240.1-P
Bra035878.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24620.1	Bra010128.1-P	AT5G62880.1	22500990
AT3G24620.1	Bra029240.1-P	AT5G62880.1	22500990
AT3G24620.1	Bra035878.1-P	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77402	Canola	nucleus	100.0	100.0
AT3G24620.1	Thale cress	nucleus	92.51	92.16
Bra013249.1-P	Field mustard	nucleus, plastid	91.55	92.08
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	88.29	91.09
Solyc07g032730.2.1	Tomato	nucleus	50.67	64.55
VIT_09s0002g04310.t01	Wine grape	cytosol	55.09	63.22
KRH39304	Soybean	nucleus	57.39	57.5
Bra003536.1-P	Field mustard	nucleus	56.43	57.31
KRH48369	Soybean	mitochondrion	61.04	56.58
Bra021162.1-P	Field mustard	nucleus	46.45	55.76
Bra020048.1-P	Field mustard	nucleus	52.78	55.67
PGSC0003DMT400040374	Potato	nucleus	50.1	55.53
Bra006510.1-P	Field mustard	cytosol	51.44	54.92
PGSC0003DMT400001020	Potato	nucleus	57.39	53.87
Solyc12g007150.1.1	Tomato	nucleus	56.81	53.33
Bra030396.1-P	Field mustard	nucleus	53.74	52.14
Bra018956.1-P	Field mustard	nucleus	53.55	52.05
Bra002246.1-P	Field mustard	plastid	50.48	50.87
Bra027189.1-P	Field mustard	nucleus	50.1	49.25
Bra004945.1-P	Field mustard	nucleus, plastid	35.32	40.0
Bra000971.1-P	Field mustard	nucleus	35.12	38.28
Bra037342.1-P	Field mustard	cytosol	34.93	38.16
Bra015010.1-P	Field mustard	cytosol	38.77	36.93
Bra007183.1-P	Field mustard	cytosol, plastid	37.43	34.15
Bra009621.1-P	Field mustard	nucleus	36.47	33.93
Bra009152.1-P	Field mustard	cytosol, plastid	38.58	33.78
Bra005323.1-P	Field mustard	nucleus	30.9	32.14
Bra005322.1-P	Field mustard	nucleus	21.11	28.06
Bra021161.1-P	Field mustard	nucleus	2.5	9.77

Protein Annotations

EnsemblPlants:Bra015068.1	EnsemblPlants:Bra015068.1-P	EnsemblPlantsGene:Bra015068	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	PFAM:PF03759	PFscan:PS51334
SEG:seg	UniParc:UPI0002540C73	UniProt:M4DEZ6	MapMan:27.4.3.1	:	:

Description

AT3G24620 (E=2e-249) ATROPGEF8, ROPGEF8 | ROPGEF8; Rho guanyl-nucleotide exchange factor

Coordinates

chrA07:+:3804713..3807050

Molecular Weight (calculated)

58236.9 Da

IEP (calculated)

5.622

GRAVY (calculated)

-0.569

Length

521 amino acids

Sequence
(BLAST)

001: MVAALERGLS ASKSFNFKRM FESSSTKHQQ PQTIVIENGD SHLVESNTPE SQNSDSLSES PVESIPPMIS PLNRPGKRPD RQQADTEMLK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQMSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFKGHN EFYYVSRDSE EGKQASNARS NDKWWLPPVK VPPGGLSEPA RRMLYFQKDS VTQVQKAAMA INAQVLSEMA IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLSMLD MSTEHKVLDL KNKIEASVVI WKRKLHVKDS KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD SLALKETLLA EETSDGGRTT ETDSESAGSS NSGEETEKLD PRYSKTLLDF MGWSDNSSKS SDKPTKSPGL
501: TPKKFSYLEN LNGFRSPKAR H

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.