Factsheet for Solyc12g007150.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g114070.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24620.1	Solyc03g114070.2.1	AT5G62880.1	22500990
AT4G13240.1	Solyc03g114070.2.1	AT5G62880.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001020	Potato	nucleus	96.4	96.4
Solyc07g032730.2.1	Tomato	nucleus	56.94	77.26
GSMUA_Achr6P14020_001	Banana	cytosol	53.87	69.37
GSMUA_Achr5P06900_001	Banana	cytosol	52.25	68.88
GSMUA_Achr2P09130_001	Banana	cytosol	47.39	67.26
VIT_09s0002g04310.t01	Wine grape	cytosol	54.59	66.74
GSMUA_Achr4P10530_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	51.53	66.36
Solyc06g066650.2.1	Tomato	nucleus	54.05	63.97
GSMUA_Achr3P03410_001	Banana	nucleus	58.02	63.64
TraesCS6A01G196000.1	Wheat	cytosol	48.83	62.16
OQU84790	Sorghum	cytosol	49.19	62.05
CDY03296	Canola	nucleus	36.4	61.03
Solyc03g120650.2.1	Tomato	cytosol	55.14	60.96
GSMUA_Achr3P15410_001	Banana	nucleus	53.33	59.68
AT4G13240.1	Thale cress	nucleus	55.32	59.38
Bra036671.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	53.69	59.01
Solyc12g044270.1.1	Tomato	nucleus	55.32	58.48
CDY03297	Canola	mitochondrion	54.77	58.13
CDY39783	Canola	mitochondrion	54.95	58.1
Zm00001d053307_P002	Maize	cytosol, plastid	50.45	57.97
KRH39304	Soybean	nucleus	53.87	57.5
Bra013249.1-P	Field mustard	nucleus, plastid	53.51	57.34
CDY46477	Canola	nucleus	53.51	57.01
AT3G24620.1	Thale cress	nucleus	53.69	56.98
Bra015068.1-P	Field mustard	nucleus	53.33	56.81
CDX77402	Canola	nucleus	53.33	56.81
KRH48369	Soybean	mitochondrion	57.48	56.76
TraesCSU01G211800.1	Wheat	cytosol	33.15	56.44
TraesCS6D01G183300.1	Wheat	mitochondrion	51.17	55.8
HORVU6Hr1G050860.4	Barley	mitochondrion	50.27	55.47
TraesCSU01G217800.1	Wheat	cytosol	33.87	55.29
TraesCSU01G211700.1	Wheat	cytosol	33.87	55.29
Os02t0272300-01	Rice	plasma membrane	50.81	54.97
Zm00001d016001_P002	Maize	mitochondrion	51.17	53.18
CDX93028	Canola	nucleus	37.84	44.3
Solyc04g082110.2.1	Tomato	nucleus	31.89	39.25
Solyc01g094610.2.1	Tomato	nucleus	32.43	37.74
Solyc08g006550.2.1	Tomato	nucleus	35.68	37.36
Solyc01g111930.2.1	Tomato	nucleus	38.02	36.57
Solyc09g011480.2.1	Tomato	nucleus	36.22	34.18
Solyc08g075120.2.1	Tomato	extracellular	32.61	32.15
Solyc10g086660.1.1	Tomato	nucleus	36.4	29.75
Solyc12g096220.1.1	Tomato	nucleus	30.45	23.21

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	UniProt:K4DBQ2
PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	InterPro:RopGEF
EnsemblPlantsGene:Solyc12g007150.1	EnsemblPlants:Solyc12g007150.1.1	UniParc:UPI000276AAF0	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:1587456..1591011

Molecular Weight (calculated)

62694.5 Da

IEP (calculated)

6.716

GRAVY (calculated)

-0.538

Length

555 amino acids

Sequence
(BLAST)

001: MVREIYKISK SRSFNIRKIF EGRHGHTHHH VVLENNGHGK DMKFKSQLGA KSSSTLELQQ LSSIFNKSVD HVTRFAKEGE RSRNIHKDKQ SSEMEKMKEK
101: FAKLLLGEDM SGGGKGVSSA LALSNAITNL AASVFGEQRK LEPMSEERKS RWKKEINWLL SVSDYIVEFV PSQQKSKEGT NIEVMVTQQR RDLFMNIPAL
201: KKLDAMLIDC LENFKDESEF WYVSKDADES EKGVQRDDKW WLPTIKVPPE GLSDTCRKWL QYQKDCVNQV HRASMAINAQ ILSEMEIPEN YIESLPKNGR
301: SSLGDSIYKS ITIDFFEPEQ FLSTMDLSTE HKVLDLKDRI EASIVIWQRK LHLKDGKSTW GLAVSAEKRE LFEERAEAIL LLLKQKFPGI PQSSLDISKI
401: EYNNDIGHSV LESYSRVLES LANTVMSRIE DVLYADSLTQ DPALAIEKLN LSSADSSPQF PLSGISSPRE LEAEVLSSVA QTPAAETPTL SDFIGWSEDL
501: GDTGVKKNRS TGNLEAYFKG ENDYNCIGKL ASITPKKLSY IEKIGSGLRS PTSRH

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.