Factsheet for TraesCS6A01G196000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G211800.1	Wheat	cytosol	73.39	98.16
TraesCSU01G217800.1	Wheat	cytosol	74.54	95.59
TraesCSU01G211700.1	Wheat	cytosol	74.54	95.59
OQU84790	Sorghum	cytosol	91.06	90.23
HORVU6Hr1G050860.4	Barley	mitochondrion	98.39	85.29
TraesCS6D01G183300.1	Wheat	mitochondrion	99.54	85.27
Zm00001d053307_P002	Maize	cytosol, plastid	91.74	82.82
Os02t0272300-01	Rice	plasma membrane	94.5	80.31
Zm00001d016001_P002	Maize	mitochondrion	90.6	73.97
GSMUA_Achr6P14020_001	Banana	cytosol	66.28	67.05
Solyc07g032730.2.1	Tomato	nucleus	58.49	62.35
Solyc06g066650.2.1	Tomato	nucleus	63.99	59.49
KRH44350	Soybean	nucleus	61.93	59.47
PGSC0003DMT400042632	Potato	nucleus	62.84	58.55
GSMUA_Achr3P03410_001	Banana	nucleus	67.89	58.5
PGSC0003DMT400006531	Potato	cytosol	62.61	54.38
Solyc03g120650.2.1	Tomato	cytosol	62.61	54.38
TraesCS3A01G305500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	58.49	54.26
Solyc12g044270.1.1	Tomato	nucleus	63.76	52.95
Bra020048.1-P	Field mustard	nucleus	59.17	52.23
CDY44926	Canola	nucleus	59.17	52.23
KRH23439	Soybean	nucleus	63.53	51.87
CDY42277	Canola	nucleus	58.72	51.82
KRH09881	Soybean	cytosol	63.07	51.59
CDY58963	Canola	cytosol	43.81	51.34
CDX88884	Canola	cytosol, plastid	57.34	51.23
Bra006510.1-P	Field mustard	cytosol	57.34	51.23
AT5G19560.4	Thale cress	mitochondrion	60.09	51.17
PGSC0003DMT400040374	Potato	nucleus	54.82	50.85
KRH39304	Soybean	nucleus	59.86	50.19
KRH47282	Soybean	nucleus	61.47	49.81
CDX70882	Canola	cytosol	57.57	49.7
CDX92519	Canola	plastid	56.42	49.5
PGSC0003DMT400097197	Potato	nucleus	63.76	49.38
PGSC0003DMT400001020	Potato	nucleus	62.39	49.01
KRH48369	Soybean	mitochondrion	63.07	48.93
Solyc12g007150.1.1	Tomato	nucleus	62.16	48.83
VIT_11s0016g03740.t01	Wine grape	nucleus	60.78	47.75
Bra002246.1-P	Field mustard	plastid	56.42	47.58
TraesCS1A01G392100.1	Wheat	plastid	58.03	45.1
TraesCS3A01G270400.1	Wheat	plastid	60.09	41.65
TraesCS5A01G340900.1	Wheat	cytosol	44.72	40.8
TraesCS6A01G405000.1	Wheat	nucleus	38.3	36.54
TraesCS2A01G408100.1	Wheat	cytosol	38.3	35.68
TraesCS1A01G208700.1	Wheat	nucleus	38.99	35.64
TraesCS3A01G364400.1	Wheat	nucleus	43.35	34.94
TraesCS1A01G280900.2	Wheat	cytosol	42.66	31.58
TraesCS6A01G270900.1	Wheat	cytosol	36.47	29.28

Protein Annotations

EnsemblPlants:TraesCS6A01G196000.1	EnsemblPlantsGene:TraesCS6A01G196000	Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	GO:GO:0003674	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	InterPro:IPR005512	InterPro:PRONE_dom	InterPro:RopGEF	PANTHER:PTHR33101
PANTHER:PTHR33101:SF16	PFAM:PF03759	PFscan:PS51334	SEG:seg	MapMan:27.4.3.1	:

Description

No Description!

Coordinates

chr6A:+:283928050..283932714

Molecular Weight (calculated)

49338.0 Da

IEP (calculated)

5.209

GRAVY (calculated)

-0.464

Length

436 amino acids

Sequence
(BLAST)

001: MKERFAKLLL GEDMSGTGKG VPSALALSNA ITNLAASVFG EHRKLEPMAP DTKERWKKEV GWLLSVTDHI VEFVPTRQTA ENGTTMEIMS TAQRRDLQMN
101: IPALRKLDAM LIGYMDNFVD QTEFWYEKGG DNKRDDDKWW MPTVKVPAEG LSDVTRKWLQ YQKECVNQVL KAAMAINAQV LVEMEIPEIY IESLPKKGKT
201: SLGDAIYRSI TDEEFDPIEF LEGVDLSTEH KVLDLKNRIE ASTIIWKRKM QTKDAKSSWG SIISFEKREQ FEERAETILH LLKLQFPGAP QSQLDISKIQ
301: YNRDVGYALL ESYSRVLESL AYSVISRIED VLGADAAATN LTASEAARRQ LEMNAPRKLD AREELEKLNE APASMTLYDF MGWHFDQDEL MRKKEGGTLD
401: EAGEAMLLKK APSLAPKKFS YVDSLTGGVR SPSARH

Best Arabidopsis Sequence Match ( AT1G52240.1 )
(BLAST)

001: MVKAMEQEQE TYKSRLFHFK NMNENSASRH VKSWSSDCAM RMDGSDNLDD DDNDMMMFRS QPGKCGSVDR PSLPIGGVTP NRNDKLPRVS SSDSMEALII
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS

Arabidopsis Description

ROPGEF11ROPGEF11 [Source:UniProtKB/TrEMBL;Acc:A0A178W8V0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.