Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 2
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G211900.1 | Wheat | nucleus | 98.74 | 98.74 |
| TraesCS1B01G222700.1 | Wheat | plastid | 98.11 | 97.91 |
| HORVU1Hr1G053350.4 | Barley | nucleus, plastid | 97.27 | 97.07 |
| Os10t0550300-00 | Rice | plastid | 80.08 | 79.75 |
| EER91970 | Sorghum | plastid | 79.25 | 77.3 |
| Zm00001d029850_P001 | Maize | nucleus, plastid | 78.62 | 76.69 |
| KRH15734 | Soybean | cytosol | 31.87 | 58.46 |
| TraesCS2A01G408100.1 | Wheat | cytosol | 57.23 | 58.33 |
| CDY57376 | Canola | cytosol, extracellular, nucleus | 8.81 | 56.0 |
| GSMUA_Achr5P20570_001 | Banana | nucleus | 56.39 | 55.81 |
| TraesCS6A01G405000.1 | Wheat | nucleus | 52.41 | 54.7 |
| KRH65102 | Soybean | nucleus | 54.93 | 54.47 |
| PGSC0003DMT400000136 | Potato | nucleus | 54.3 | 54.3 |
| Solyc01g094610.2.1 | Tomato | nucleus | 54.09 | 54.09 |
| KRH48179 | Soybean | nucleus | 41.72 | 53.07 |
| CDY70620 | Canola | nucleus | 51.78 | 52.67 |
| AT4G00460.2 | Thale cress | nucleus | 51.99 | 52.43 |
| Bra000971.1-P | Field mustard | nucleus | 52.41 | 52.3 |
| KRG94270 | Soybean | mitochondrion | 12.16 | 52.25 |
| CDY07216 | Canola | cytosol | 51.99 | 52.21 |
| CDY51157 | Canola | nucleus | 49.69 | 52.09 |
| VIT_15s0046g02530.t01 | Wine grape | plastid | 54.3 | 51.39 |
| Bra037342.1-P | Field mustard | cytosol | 51.36 | 51.36 |
| KRH00737 | Soybean | nucleus, plastid | 53.04 | 49.41 |
| CDX74772 | Canola | nucleus, plastid | 46.12 | 48.89 |
| KRH40457 | Soybean | cytosol | 52.41 | 48.83 |
| Bra004945.1-P | Field mustard | nucleus, plastid | 46.75 | 48.48 |
| AT1G01700.4 | Thale cress | nucleus | 52.2 | 48.35 |
| CDY18892 | Canola | nucleus | 45.7 | 48.23 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 46.75 | 48.16 |
| TraesCS5A01G340900.1 | Wheat | cytosol | 42.35 | 42.26 |
| TraesCS3A01G364400.1 | Wheat | nucleus | 46.75 | 41.22 |
| TraesCS6A01G196000.1 | Wheat | cytosol | 35.64 | 38.99 |
| CDX91908 | Canola | cytosol | 52.2 | 38.02 |
| TraesCS1A01G280900.2 | Wheat | cytosol | 46.12 | 37.35 |
| TraesCS3A01G305500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 35.22 | 35.74 |
| TraesCS1A01G392100.1 | Wheat | plastid | 36.69 | 31.19 |
| TraesCS6A01G270900.1 | Wheat | cytosol | 33.96 | 29.83 |
| TraesCS3A01G270400.1 | Wheat | plastid | 37.95 | 28.78 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G208700.1 | EnsemblPlantsGene:TraesCS1A01G208700 | Gene3D:1.20.58.2010 | GO:GO:0003674 | GO:GO:0005089 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR005512 | InterPro:PRONE_dom | InterPro:RopGEF | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF9 |
| PFAM:PF03759 | PFscan:PS51334 | SEG:seg | MapMan:27.4.3.1 | : | : |
Description
No Description!
Coordinates
chr1A:-:370108824..370110524
Molecular Weight (calculated)
51582.7 Da
IEP (calculated)
6.258
GRAVY (calculated)
-0.260
Length
477 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSSNSPST SVSDESSEAE AQCCSSSSTA PSLHDTVDFS RTASDVSTFS DRSVDHSGPF GTAAVSKLIG GRGSPAAALS RLSMKPRADV LDRRSAEDEL
101: DLVKERFSKL LLGEDMSGGG KGVCTAVAIS NAITNLYATV FGNCHKLEPL PAGKKAMWRR EMDCLLAVCD YIVEFYPSTQ PLSDGTRVEV MATRPRSDIY
201: INLPALEKLD AMLIEIMDSF QKAEFWYADA GTRSFGSVTS SSSPSSSFRR STTTAHRNED KWWVPVPCVP EGGLSVKARK ELRQRRDCAN QIHKAAVAIN
301: SGVLSDMEVP ESFMALLPKS GKASVGDAVY RAMHSSDKFS PDYLLDCVDV SSEHEALALA DRVEAAMYVW RRKATASHGV GRSAQWSRVK ELAAAADDGG
401: EGGKNVALAG RAESLLLCIK HRFPGLSQTT LDTSKIQFNK DVGQAILESY SRVLESLAFN IVSWTDEVLF ADKAARK
101: DLVKERFSKL LLGEDMSGGG KGVCTAVAIS NAITNLYATV FGNCHKLEPL PAGKKAMWRR EMDCLLAVCD YIVEFYPSTQ PLSDGTRVEV MATRPRSDIY
201: INLPALEKLD AMLIEIMDSF QKAEFWYADA GTRSFGSVTS SSSPSSSFRR STTTAHRNED KWWVPVPCVP EGGLSVKARK ELRQRRDCAN QIHKAAVAIN
301: SGVLSDMEVP ESFMALLPKS GKASVGDAVY RAMHSSDKFS PDYLLDCVDV SSEHEALALA DRVEAAMYVW RRKATASHGV GRSAQWSRVK ELAAAADDGG
401: EGGKNVALAG RAESLLLCIK HRFPGLSQTT LDTSKIQFNK DVGQAILESY SRVLESLAFN IVSWTDEVLF ADKAARK
001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE
Arabidopsis Description
ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.