Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51157 | Canola | nucleus | 94.32 | 98.46 |
| Bra037342.1-P | Field mustard | cytosol | 98.74 | 98.32 |
| CDY70620 | Canola | nucleus | 90.32 | 91.47 |
| AT4G00460.2 | Thale cress | nucleus | 90.95 | 91.33 |
| CDX91908 | Canola | cytosol | 92.21 | 66.87 |
| Solyc01g094610.2.1 | Tomato | nucleus | 62.95 | 62.68 |
| PGSC0003DMT400000136 | Potato | nucleus | 62.53 | 62.26 |
| CDX74772 | Canola | nucleus, plastid | 56.21 | 59.33 |
| VIT_15s0046g02530.t01 | Wine grape | plastid | 62.95 | 59.33 |
| CDY18892 | Canola | nucleus | 56.0 | 58.85 |
| GSMUA_Achr5P20570_001 | Banana | nucleus | 56.0 | 55.19 |
| Os10t0550300-00 | Rice | plastid | 53.47 | 53.03 |
| EES11256 | Sorghum | nucleus | 52.21 | 52.65 |
| Zm00001d002696_P001 | Maize | cytosol | 50.95 | 52.38 |
| TraesCS2B01G426300.1 | Wheat | cytosol | 50.95 | 52.04 |
| TraesCS1A01G208700.1 | Wheat | nucleus | 52.21 | 51.99 |
| TraesCS1D01G211900.1 | Wheat | nucleus | 52.21 | 51.99 |
| TraesCS1B01G222700.1 | Wheat | plastid | 52.21 | 51.88 |
| TraesCS2A01G408100.1 | Wheat | cytosol | 50.74 | 51.5 |
| HORVU1Hr1G053350.4 | Barley | nucleus, plastid | 51.79 | 51.46 |
| TraesCS2D01G405400.1 | Wheat | nucleus | 50.74 | 51.28 |
| EER91970 | Sorghum | plastid | 52.63 | 51.12 |
| Zm00001d029850_P001 | Maize | nucleus, plastid | 52.0 | 50.51 |
| CDY69871 | Canola | cytosol | 11.79 | 50.0 |
| Zm00001d021489_P001 | Maize | nucleus, plastid | 48.63 | 49.78 |
| Os07t0481100-01 | Rice | cytosol | 48.0 | 49.57 |
| CDY57376 | Canola | cytosol, extracellular, nucleus | 7.79 | 49.33 |
| EER99384 | Sorghum | nucleus, plastid | 47.79 | 49.03 |
| TraesCS6A01G405000.1 | Wheat | nucleus | 47.16 | 49.02 |
| Os04t0559100-00 | Rice | cytosol | 18.74 | 48.9 |
| HORVU6Hr1G092860.2 | Barley | nucleus | 46.53 | 48.36 |
| TraesCS6D01G388300.1 | Wheat | nucleus | 47.37 | 48.18 |
| TraesCS6B01G449200.1 | Wheat | nucleus | 46.95 | 47.35 |
| HORVU2Hr1G096430.13 | Barley | mitochondrion | 50.53 | 45.2 |
| CDY10476 | Canola | nucleus | 48.63 | 41.25 |
| CDY40325 | Canola | nucleus | 48.42 | 41.07 |
| CDX77457 | Canola | cytosol | 46.11 | 40.04 |
| CDX85176 | Canola | cytosol | 46.11 | 40.04 |
| CDY41197 | Canola | cytosol, plastid | 44.42 | 38.09 |
| CDY40246 | Canola | cytosol, plastid | 44.21 | 37.7 |
| CDY12411 | Canola | cytosol | 10.11 | 37.21 |
| CDX67930 | Canola | nucleus | 37.47 | 36.55 |
| CDX70109 | Canola | cytosol | 48.42 | 36.33 |
| CDX98888 | Canola | cytosol | 48.21 | 35.89 |
| CDY45633 | Canola | nucleus | 39.16 | 35.56 |
| CDY03297 | Canola | mitochondrion | 38.95 | 35.37 |
| CDX77402 | Canola | nucleus | 38.74 | 35.32 |
| CDY46477 | Canola | nucleus | 38.74 | 35.32 |
| CDY39783 | Canola | mitochondrion | 38.95 | 35.24 |
| CDY03296 | Canola | nucleus | 24.21 | 34.74 |
| CDX88884 | Canola | cytosol, plastid | 35.16 | 34.22 |
| CDX79407 | Canola | cytosol, endoplasmic reticulum, nucleus | 38.32 | 33.89 |
| CDY42277 | Canola | nucleus | 34.95 | 33.6 |
| CDY44926 | Canola | nucleus | 34.95 | 33.6 |
| CDX87879 | Canola | nucleus | 39.16 | 33.39 |
| CDX70882 | Canola | cytosol | 35.37 | 33.27 |
| CDX97723 | Canola | nucleus | 36.84 | 32.89 |
| CDX92519 | Canola | plastid | 34.32 | 32.8 |
| CDY30136 | Canola | nucleus | 36.63 | 31.64 |
| CDY58963 | Canola | cytosol | 24.42 | 31.18 |
| CDX84189 | Canola | cytosol | 32.21 | 31.16 |
| CDY31706 | Canola | cytosol | 32.42 | 30.62 |
| CDY67259 | Canola | nucleus | 37.89 | 29.95 |
| CDY52982 | Canola | nucleus | 37.68 | 29.78 |
| CDY28381 | Canola | nucleus | 36.42 | 28.88 |
| CDY20181 | Canola | nucleus | 36.42 | 28.5 |
| CDY12303 | Canola | nucleus | 33.05 | 27.89 |
| CDY62299 | Canola | cytosol, nucleus, plastid | 32.84 | 27.86 |
| CDX93028 | Canola | nucleus | 25.26 | 25.32 |
Protein Annotations
| EnsemblPlants:CDY07216 | EnsemblPlantsGene:GSBRNA2T00123577001 | Gene3D:1.20.58.2010 | GO:A0A078F1F7 | GO:GO:0003674 | GO:GO:0005089 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR005512 | InterPro:PRONE_dom | InterPro:RopGEF | PANTHER:PTHR33101 |
| PANTHER:PTHR33101:SF9 | PFAM:PF03759 | PFscan:PS51334 | ProteinID:CDY07216 | ProteinID:CDY07216.1 | SEG:seg |
| UniParc:UPI0004EBDA2F | MapMan:27.4.3.1 | : | : | : | : |
Description
BnaCnng02310D
Coordinates
chrLK031975:+:868340..870290
Molecular Weight (calculated)
53550.5 Da
IEP (calculated)
4.678
GRAVY (calculated)
-0.440
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MENVLNPDEN GDRVYHQSSI DPNDNSTSET PVSLTMSMDS FVYPRTCSES TSGFSDQIDE TSSSCSEPSP SDWPVLTESK SSKCLTTGLE LQTNEIREAQ
101: EISEPELETM KERFAKLLLG EDMSGSGKGV CTAVTISNAI TNLYATVFGQ NLRLEPLETE KRALWKREMN CLLSVCDYIV EFIPRCQSLS NGTTVEVMES
201: RPRADIYINL PALRKLDSML MEVLDGFQDT EFWYAEEGSL SMKSARSATG SFRKVIVQRK EEKWWLPVPL VPPEGLSDKA RKQLKNKRES TNQIHKAAMA
301: INSSILSEME IPESYMATLP KCGKSSVGDS IYRYMSGSGR FFPEKLLDCL NIASEHEAVQ LADRVEASMY TWRRKACLSN SKNSWNMVKD LMSTTERTDK
401: NYVMAERAET LLFCLKQRYP ELSQTSLDIC KIQYNKDVGK AVLESYSRVL EGLAFNIVAW IDDVLYVDKT MSGSE
101: EISEPELETM KERFAKLLLG EDMSGSGKGV CTAVTISNAI TNLYATVFGQ NLRLEPLETE KRALWKREMN CLLSVCDYIV EFIPRCQSLS NGTTVEVMES
201: RPRADIYINL PALRKLDSML MEVLDGFQDT EFWYAEEGSL SMKSARSATG SFRKVIVQRK EEKWWLPVPL VPPEGLSDKA RKQLKNKRES TNQIHKAAMA
301: INSSILSEME IPESYMATLP KCGKSSVGDS IYRYMSGSGR FFPEKLLDCL NIASEHEAVQ LADRVEASMY TWRRKACLSN SKNSWNMVKD LMSTTERTDK
401: NYVMAERAET LLFCLKQRYP ELSQTSLDIC KIQYNKDVGK AVLESYSRVL EGLAFNIVAW IDDVLYVDKT MSGSE
001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE
Arabidopsis Description
ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.