Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G405400.1 | Wheat | nucleus | 98.28 | 97.23 |
| TraesCS2A01G408100.1 | Wheat | cytosol | 97.63 | 97.01 |
| HORVU2Hr1G096430.13 | Barley | mitochondrion | 95.7 | 83.8 |
| Zm00001d002696_P001 | Maize | cytosol | 80.65 | 81.17 |
| EES11256 | Sorghum | nucleus | 81.72 | 80.68 |
| Os04t0559100-00 | Rice | cytosol | 28.6 | 73.08 |
| TraesCS1B01G222700.1 | Wheat | plastid | 58.49 | 56.9 |
| GSMUA_Achr5P20570_001 | Banana | nucleus | 57.42 | 55.39 |
| KRH15734 | Soybean | cytosol | 29.89 | 53.46 |
| Solyc01g094610.2.1 | Tomato | nucleus | 54.19 | 52.83 |
| PGSC0003DMT400000136 | Potato | nucleus | 54.19 | 52.83 |
| TraesCS6B01G449200.1 | Wheat | nucleus | 52.9 | 52.23 |
| CDY57376 | Canola | cytosol, extracellular, nucleus | 8.39 | 52.0 |
| CDY70620 | Canola | nucleus | 51.61 | 51.17 |
| KRH65102 | Soybean | nucleus | 52.9 | 51.14 |
| CDY07216 | Canola | cytosol | 52.04 | 50.95 |
| CDY51157 | Canola | nucleus | 49.68 | 50.77 |
| AT4G00460.2 | Thale cress | nucleus | 51.61 | 50.74 |
| Bra000971.1-P | Field mustard | nucleus | 51.83 | 50.42 |
| KRH48179 | Soybean | nucleus | 40.43 | 50.13 |
| Bra037342.1-P | Field mustard | cytosol | 51.4 | 50.1 |
| VIT_15s0046g02530.t01 | Wine grape | plastid | 53.98 | 49.8 |
| CDX74772 | Canola | nucleus, plastid | 47.53 | 49.11 |
| CDY18892 | Canola | nucleus | 47.31 | 48.67 |
| KRH00737 | Soybean | nucleus, plastid | 53.55 | 48.63 |
| Bra004945.1-P | Field mustard | nucleus, plastid | 47.74 | 48.26 |
| KRH40457 | Soybean | cytosol | 52.9 | 48.05 |
| AT1G01700.4 | Thale cress | nucleus | 52.9 | 47.77 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 47.31 | 47.52 |
| KRG94270 | Soybean | mitochondrion | 10.54 | 44.14 |
| TraesCS5B01G339200.1 | Wheat | cytosol | 44.3 | 42.65 |
| TraesCS3B01G396500.1 | Wheat | cytosol | 47.53 | 41.0 |
| TraesCS1B01G289900.1 | Wheat | cytosol | 47.96 | 39.4 |
| CDX91908 | Canola | cytosol | 51.83 | 36.79 |
| TraesCS3B01G331000.1 | Wheat | nucleus | 36.34 | 36.34 |
| TraesCS3B01G304200.1 | Wheat | plastid | 38.92 | 35.08 |
| TraesCS1B01G420200.1 | Wheat | nucleus, plastid | 38.71 | 31.86 |
| TraesCS6B01G298000.1 | Wheat | cytosol | 32.69 | 27.99 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G426300.1 | EnsemblPlantsGene:TraesCS2B01G426300 | Gene3D:1.20.58.2010 | GO:GO:0003674 | GO:GO:0005089 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR005512 | InterPro:PRONE_dom | InterPro:RopGEF | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF7 |
| PFAM:PF03759 | PFscan:PS51334 | SEG:seg | MapMan:27.4.3.1 | : | : |
Description
No Description!
Coordinates
chr2B:-:612687873..612690191
Molecular Weight (calculated)
51570.1 Da
IEP (calculated)
5.512
GRAVY (calculated)
-0.464
Length
465 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTPTSSTWE EGSQSDFDDD DMPQRGSVLR ALNLRRDDDV DDGAASDVSS ECSGEPGSPY GSPYPRWPVC KLAARMPPPA PLLQRLGTEP RRGGAHDRKA
101: GCTELQLMKE RFSKLLLGED MSGGGKGVST AAAISNAITN LYATVFGSCH RLEPLPVEKK SMWRREMDCL LSVCDYIVEF FPSKDILPDG TTREVMATRP
201: RSDIYVNLPA LEKLDDMLLE ILDGFQKTEF WYLNDKAHKD SCDDSAPCRP ASHRGEERWW LPVPCVTKSG LTESARRDLR QKHDCASQIH KAAMAINNGI
301: LAEIKIPESY TQTLPKCGRA SVGDAIYRGM SFPGKFSPEY LLDCLEISSE HEALEAADRV EAAMHVWRRK AGHGHARSPW GAVKDLMESD KNVMLASRAE
401: DALLCLKHRF PGLSQTTLDA SKIQHNKDVG QAVLESYSRV LESLAYTIVT CIDDVLFADE SARKI
101: GCTELQLMKE RFSKLLLGED MSGGGKGVST AAAISNAITN LYATVFGSCH RLEPLPVEKK SMWRREMDCL LSVCDYIVEF FPSKDILPDG TTREVMATRP
201: RSDIYVNLPA LEKLDDMLLE ILDGFQKTEF WYLNDKAHKD SCDDSAPCRP ASHRGEERWW LPVPCVTKSG LTESARRDLR QKHDCASQIH KAAMAINNGI
301: LAEIKIPESY TQTLPKCGRA SVGDAIYRGM SFPGKFSPEY LLDCLEISSE HEALEAADRV EAAMHVWRRK AGHGHARSPW GAVKDLMESD KNVMLASRAE
401: DALLCLKHRF PGLSQTTLDA SKIQHNKDVG QAVLESYSRV LESLAYTIVT CIDDVLFADE SARKI
001: MENLSNPDEN DDHQSPRSID QNDQSAVETP VYSTMSIDSF VYPRTCSETT SGFSDQIDET NSFCSEASPC NWPVLTESKS SKCLSGLEMQ SNECLVVQEI
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE
101: SEPELETMKE RFAKLLLGED MSGSGKGVCT AVTISNAITN LYATVFGQNL RLEPLETEKR ALWKREMNCL LSVCDYIVEF IPRCQNLSNG ATVEVMESRP
201: RADIYINLPA LRKLDSMLME ALDSFQNTEF WYAEEGSLSM KSARSSTGSF RKVIVQRKEE KWWLPVPLVP SEGLSDKARK QLKNKRESTN QIHKAAMAIN
301: SSILSEMEIP DSYMTTLPKC GKSSVGDSIY RYMSGSGRFF PEQLLDCLNI SSEHEAVQLA DRVEASMYTW RRKSCLSNSK NSWNMVKDLM STTERTDKNY
401: VMAERAETLL FCLKQRYPEL SQTSLDICKI QYNKDVGKAV LESYSRVLEG LAFNIVAWID DVLYVDKTMR GSE
Arabidopsis Description
ROPGEF3Rop guanine nucleotide exchange factor 3 [Source:UniProtKB/Swiss-Prot;Acc:A4IJ27]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.