Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0742200-01 | |
| Os06t0234200-03 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45890.1 | Os02t0742200-01 | AT5G62880.1 | 22500990 |
| AT2G45890.1 | Os06t0234200-03 | AT5G62880.1 | 22500990 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11256 | Sorghum | nucleus | 78.02 | 30.15 |
| Zm00001d002696_P001 | Maize | cytosol | 75.82 | 29.87 |
| TraesCS2B01G426300.1 | Wheat | cytosol | 73.08 | 28.6 |
| TraesCS2A01G408100.1 | Wheat | cytosol | 72.53 | 28.21 |
| TraesCS2D01G405400.1 | Wheat | nucleus | 72.53 | 28.09 |
| HORVU2Hr1G096430.13 | Barley | mitochondrion | 72.53 | 24.86 |
| Os07t0481100-01 | Rice | cytosol | 57.69 | 22.83 |
| Os10t0550300-00 | Rice | plastid | 59.34 | 22.55 |
| GSMUA_Achr5P20570_001 | Banana | nucleus | 57.14 | 21.58 |
| CDY51157 | Canola | nucleus | 48.9 | 19.56 |
| KRH65102 | Soybean | nucleus | 51.65 | 19.54 |
| CDX74772 | Canola | nucleus, plastid | 47.8 | 19.33 |
| CDY18892 | Canola | nucleus | 47.8 | 19.25 |
| Solyc01g094610.2.1 | Tomato | nucleus | 50.0 | 19.08 |
| PGSC0003DMT400000136 | Potato | nucleus | 50.0 | 19.08 |
| AT4G00460.2 | Thale cress | nucleus | 49.45 | 19.03 |
| CDY70620 | Canola | nucleus | 48.9 | 18.98 |
| Bra004945.1-P | Field mustard | nucleus, plastid | 47.8 | 18.91 |
| VIT_15s0046g02530.t01 | Wine grape | plastid | 52.2 | 18.85 |
| KRH40457 | Soybean | cytosol | 52.75 | 18.75 |
| CDY07216 | Canola | cytosol | 48.9 | 18.74 |
| Bra000971.1-P | Field mustard | nucleus | 48.9 | 18.62 |
| KRH00737 | Soybean | nucleus, plastid | 52.2 | 18.55 |
| Bra037342.1-P | Field mustard | cytosol | 48.35 | 18.45 |
| AT1G01700.4 | Thale cress | nucleus | 51.65 | 18.25 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 46.15 | 18.14 |
| Os01t0849100-01 | Rice | cytosol | 46.7 | 15.57 |
| Os05t0454200-01 | Rice | nucleus | 46.15 | 14.79 |
| Os09t0544800-01 | Rice | nucleus | 42.86 | 13.9 |
| CDX91908 | Canola | cytosol | 48.9 | 13.59 |
| Os01t0760300-01 | Rice | plasma membrane | 36.81 | 12.86 |
| Os02t0272300-01 | Rice | plasma membrane | 35.71 | 12.67 |
| Os01t0675000-01 | Rice | mitochondrion | 36.81 | 12.09 |
| Os05t0560100-01 | Rice | mitochondrion | 33.52 | 10.72 |
| CDY57376 | Canola | cytosol, extracellular, nucleus | 4.4 | 10.67 |
| Os02t0702600-02 | Rice | cytosol | 26.37 | 8.84 |
| KRH48179 | Soybean | nucleus | 16.48 | 8.0 |
| KRG94270 | Soybean | mitochondrion | 1.65 | 2.7 |
| KRH15734 | Soybean | cytosol | 1.1 | 0.77 |
Protein Annotations
| EnsemblPlants:Os04t0559100-00 | EnsemblPlantsGene:Os04g0559100 | Gene3D:1.20.58.1310 | Gene3D:1.20.58.2010 | GO:GO:0003674 | GO:GO:0005085 |
| GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR005512 | InterPro:PRONE_dom |
| InterPro:RopGEF | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF7 | PFAM:PF03759 | PFscan:PS51334 | ProteinID:BAS90455.1 |
| SEG:seg | UniParc:UPI000393BB9B | UniProt:A0A0P0WDR5 | MapMan:35.1 | : | : |
Description
guanine nucleotide exchange factor for Rop 9Similar to Pollen-specific kinase partner protein. (Os04t0559100-00)
Coordinates
chr4:+:28015166..28015926
Molecular Weight (calculated)
20422.4 Da
IEP (calculated)
8.094
GRAVY (calculated)
-0.287
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: CGRASVGDLI YRHMSFPGKF SPEYLLDRLE ISSEHDALEA ADRVEAAMHV WRRKASQGHS RSPWSAVKEL MESDKNVMLA SRAGDVLLCL KQRFPGLSQT
101: TLDASKIQYN KVTTPTHHQQ RRVATSSPWT NTNTKLLLLL FSVQDVGQAI LEGYSRVLES LAYNIVTCID DVLFADESAR KI
101: TLDASKIQYN KVTTPTHHQQ RRVATSSPWT NTNTKLLLLL FSVQDVGQAI LEGYSRVLES LAYNIVTCID DVLFADESAR KI
001: MENLPNHEEN DDVGYHQSPG PIDPNDHSAS ETPVYSTMST DSFAYHRTCS ETSGGGFSDQ IDETSSFCTE ASPSDWPVLT ESNNSASSNF PTVFDLKHNQ
101: IETDEHLAVQ EISEPELETM KERFSKLLLG EDMSGSGKGV CTAVTISNAI TNLYATVFGQ NLRLEPLEIE QKTTWKREMN CLLSVCDYIF EFIPKSQNLS
201: NGATVEVMES RPRADIYINL PALRKLDSML MEALDSFQKT EFWYAEEGSL SMKSTRSATG SFRKVIVQRK EEKWWLPIPL VPLQGLSEKA RKQLKSKRES
301: TNQIHKAAMA INSSILGEMD IPDSYMATLP KSGKASTGDA IYRHMTSSGR FSPEKLLDRL KIVSEHEALQ LADRVEASMY TWRRKACLNN SKSSWNMVKD
401: LMSITERSDK NYVLAERAES LLFCLKQRYP ELSQTSLDIC KIHCNKDVGK AVLESYSRVL EGLAFNIVAW IDDVLYVDKT MRGEE
101: IETDEHLAVQ EISEPELETM KERFSKLLLG EDMSGSGKGV CTAVTISNAI TNLYATVFGQ NLRLEPLEIE QKTTWKREMN CLLSVCDYIF EFIPKSQNLS
201: NGATVEVMES RPRADIYINL PALRKLDSML MEALDSFQKT EFWYAEEGSL SMKSTRSATG SFRKVIVQRK EEKWWLPIPL VPLQGLSEKA RKQLKSKRES
301: TNQIHKAAMA INSSILGEMD IPDSYMATLP KSGKASTGDA IYRHMTSSGR FSPEKLLDRL KIVSEHEALQ LADRVEASMY TWRRKACLNN SKSSWNMVKD
401: LMSITERSDK NYVLAERAES LLFCLKQRYP ELSQTSLDIC KIHCNKDVGK AVLESYSRVL EGLAFNIVAW IDDVLYVDKT MRGEE
Arabidopsis Description
ATROPGEF2RHO guanyl-nucleotide exchange factor 2 [Source:TAIR;Acc:AT1G01700]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.