Factsheet for Os05t0560100-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0201000-01
Os01t0256400-01
Os01t0950800-01
Os02t0232400-01
Os02t0269200-01
Os02t0506100-00
Os03t0309800-02
Os04t0382800-00
Os04t0589200-01
Os04t0654700-02
Os06t0150100-01
Os06t0275000-01
Os06t0492700-00
Os08t0453800-00
Os10t0580500-00
Os12t0182200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52240.1	Os04t0654700-02	AT1G22920.1	21798944
AT1G52240.1	Os12t0182200-01	AT1G34430.1	21798944
AT1G52240.1	Os01t0950800-01	AT1G34570.1	21798944
AT1G52240.1	Os10t0580500-00	AT1G34570.1	21798944
AT1G52240.1	Os02t0232400-01	AT2G42790.1	21798944
AT1G52240.1	Os03t0309800-02	AT3G06430.1	21798944
AT1G52240.1	Os02t0269200-01	AT3G16120.1	21798944
AT1G52240.1	Os04t0589200-01	AT3G17668.1	21798944
AT1G52240.1	Os01t0256400-01	AT4G15930.1	21798944
AT1G52240.1	Os06t0492700-00	AT4G15930.1	21798944
AT1G52240.1	Os06t0150100-01	AT4G32960.1	21798944
AT1G52240.1	Os02t0506100-00	AT5G22310.1	21798944
AT1G52240.1	Os04t0382800-00	AT5G22310.1	21798944
AT1G52240.1	Os06t0275000-01	AT5G57660.1	21798944
AT1G52240.1	Os01t0201000-01	AT5G64960.1	21798944
AT1G52240.1	Os08t0453800-00	AT5G64960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19937	Sorghum	mitochondrion	72.41	74.91
Zm00001d038989_P002	Maize	nucleus, plastid	65.73	73.33
TraesCS1D01G400200.2	Wheat	plastid	71.35	71.86
TraesCS1A01G392100.1	Wheat	plastid	70.65	71.66
TraesCS1B01G420200.1	Wheat	nucleus, plastid	70.65	71.15
Zm00001d009549_P002	Maize	mitochondrion	68.89	71.01
HORVU1Hr1G086590.2	Barley	plastid	69.95	59.05
Os02t0272300-01	Rice	plasma membrane	49.91	55.36
Os01t0675000-01	Rice	mitochondrion	53.6	55.05
Os01t0760300-01	Rice	plasma membrane	48.15	52.59
Bra021162.1-P	Field mustard	nucleus	39.54	51.84
Bra018956.1-P	Field mustard	nucleus	47.98	50.93
CDY45633	Canola	nucleus	46.57	50.67
Bra030396.1-P	Field mustard	nucleus	47.1	49.91
AT1G52240.1	Thale cress	nucleus	47.45	49.72
CDX87879	Canola	nucleus	46.75	47.76
Bra027189.1-P	Field mustard	nucleus	44.11	47.36
CDX97723	Canola	nucleus	43.76	46.8
CDY30136	Canola	nucleus	44.99	46.55
AT3G16130.1	Thale cress	nucleus	43.76	46.28
CDY52982	Canola	nucleus	48.15	45.59
CDY67259	Canola	nucleus	47.98	45.42
CDY28381	Canola	nucleus	43.94	41.74
CDY20181	Canola	nucleus	43.76	41.02
Os07t0481100-01	Rice	cytosol	31.28	38.7
Os10t0550300-00	Rice	plastid	32.34	38.41
Os01t0849100-01	Rice	cytosol	36.38	37.91
Os09t0544800-01	Rice	nucleus	36.2	36.72
Os05t0454200-01	Rice	nucleus	36.2	36.27
Os04t0559100-00	Rice	cytosol	10.72	33.52
Os02t0702600-02	Rice	cytosol	28.82	30.2
Bra021161.1-P	Field mustard	nucleus	2.99	12.78

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	ProteinID:AAU10640.1	EMBL:AK072239	ProteinID:BAF18219.1
ProteinID:BAS95310.1	ProteinID:EEE64670.1	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	InterPro:IPR005512	EnsemblPlantsGene:Os05g0560100	EnsemblPlants:Os05t0560100-01	PFAM:PF03759
InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF3	UniProt:Q688Y9	InterPro:RopGEF
UniParc:UPI000042AB95	SEG:seg	:	:	:	:

Description

guanine nucleotide exchange factor for Rop 2Similar to Pollen-specific kinase partner protein. (Os05t0560100-01)

Coordinates

chr5:-:27880066..27882840

Molecular Weight (calculated)

63377.5 Da

IEP (calculated)

8.778

GRAVY (calculated)

-0.511

Length

569 amino acids

Sequence
(BLAST)

001: MARPLLKIGH GLDRFRWRRS TSSSSSSPLA LSLSSSSAAA LSDDDPGSPM DPEMPPAARR ALSRSSGSRG RLSFELPPLA GGPSDKEEAP PRTSSAPAPA
101: RPAPAALHEG PPSDAEMVRE KFSKLLLGED MSGTGKGVSS ALALSNAITN LAASVFGEQR RLQPMAADQK ARWRREIDWL LSVSDHIVEF VPSKQVSEDG
201: STMEIMITQQ RRDLQMNIPA LRKLDAMLLE YLDNFKDKQE FWYVSKDASE SEKGNTPRQD DRWWLPTVRV PPGGLSDASR KWVQHQKDLV NQVLKAAMAI
301: NANVLMEMDV PEAYIESLPK NGKSTLGDSM YKIITEDHFN PEELLGTVDM SAEYNIIDLK NRIEASVVIW QRKMVHKEGK LSWGHGVKFE KREKFEARAE
401: NVLLLIKHRF PGIAQSALDI SKIQYNRDIG LAILESYSRT LESLAFTVMS RIEDVLHADS LAQASNTRTQ ESMRMASLSR YDTDKVVIDA KAEVERLGRM
501: EPVSATLFDF VSPRDQDVVA TKMDSKEKGC RGDAHSRKLT KVSPIATKRY SYLEKLENLS GTRSPISRH

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.