CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70996
CDX72382
CDX79848
CDX79851
CDX88802
CDX92367
CDX92489
CDX97722
CDY02749
CDY03143
CDY03145
CDY04768
CDY05264
CDY12037
CDY12039
CDY13510
CDY15651
CDY21400
CDY24692
CDY24919
CDY25761
CDY25892
CDY30135
CDY31293
CDY33994
CDY35839
CDY42317
CDY44954
CDY46888
CDY49730
CDY50821
CDY57865
CDY58843
CDY67997

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52240.1	CDY04768	AT1G22920.1	21798944
AT1G52240.1	CDY21400	AT1G22920.1	21798944
AT1G52240.1	CDY25761	AT1G22920.1	21798944
AT1G52240.1	CDY03145	AT1G34430.1	21798944
AT1G52240.1	CDY12039	AT1G34430.1	21798944
AT1G52240.1	CDY03143	AT1G34570.1	21798944
AT1G52240.1	CDY12037	AT1G34570.1	21798944
AT1G52240.1	CDX79848	AT2G42790.1	21798944
AT1G52240.1	CDX79851	AT2G42790.1	21798944
AT1G52240.1	CDY15651	AT2G42790.1	21798944
AT1G52240.1	CDY50821	AT2G42790.1	21798944
AT1G52240.1	CDY05264	AT3G06430.1	21798944
AT1G52240.1	CDY24692	AT3G06430.1	21798944
AT1G52240.1	CDX97722	AT3G16120.1	21798944
AT1G52240.1	CDY30135	AT3G16120.1	21798944
AT1G52240.1	CDY46888	AT3G17668.1	21798944
AT1G52240.1	CDY24919	AT4G15930.1	21798944
AT1G52240.1	CDY57865	AT4G15930.1	21798944
AT1G52240.1	CDX72382	AT4G32960.1	21798944
AT1G52240.1	CDY13510	AT4G32960.1	21798944
AT1G52240.1	CDX92489	AT5G19920.1	21798944
AT1G52240.1	CDY35839	AT5G19920.1	21798944
AT1G52240.1	CDY42317	AT5G19920.1	21798944
AT1G52240.1	CDY44954	AT5G19920.1	21798944
AT1G52240.1	CDX70996	AT5G22310.1	21798944
AT1G52240.1	CDX88802	AT5G22310.1	21798944
AT1G52240.1	CDX92367	AT5G22310.1	21798944
AT1G52240.1	CDY67997	AT5G22310.1	21798944
AT1G52240.1	CDY02749	AT5G57660.1	21798944
AT1G52240.1	CDY25892	AT5G57660.1	21798944
AT1G52240.1	CDY49730	AT5G57660.1	21798944
AT1G52240.1	CDY58843	AT5G57660.1	21798944
AT1G52240.1	CDY31293	AT5G64960.1	21798944
AT1G52240.1	CDY33994	AT5G64960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52982	Canola	nucleus	99.17	99.17
CDY45633	Canola	nucleus	77.37	88.91
AT1G52240.1	Thale cress	nucleus	79.2	87.66
CDX87879	Canola	nucleus	77.54	83.66
CDX67930	Canola	nucleus	50.92	62.83
CDX97723	Canola	nucleus	55.57	62.78
CDY30136	Canola	nucleus	57.07	62.36
CDX79407	Canola	cytosol, endoplasmic reticulum, nucleus	51.08	57.17
CDY28381	Canola	nucleus	56.41	56.59
CDY20181	Canola	nucleus	56.24	55.68
Zm00001d012691_P001	Maize	cytosol, extracellular, mitochondrion, plastid	26.29	55.05
TraesCS3D01G296400.1	Wheat	cytosol	42.26	54.98
TraesCS3B01G331000.1	Wheat	nucleus	42.43	54.84
HORVU3Hr1G073200.1	Barley	nucleus	43.43	54.83
CDY03296	Canola	nucleus	30.12	54.68
CDY46477	Canola	nucleus	46.92	54.13
CDX77402	Canola	nucleus	46.59	53.74
CDY03297	Canola	mitochondrion	46.09	52.96
TraesCS3A01G305500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	41.26	52.77
CDY39783	Canola	mitochondrion	46.09	52.76
Os01t0760300-01	Rice	plasma membrane	45.42	52.4
Zm00001d043383_P001	Maize	nucleus	45.09	51.82
OQU87589	Sorghum	nucleus	44.26	51.45
CDY44926	Canola	nucleus	42.1	51.21
TraesCS3D01G270200.1	Wheat	plastid	43.93	50.97
CDY42277	Canola	nucleus	41.76	50.81
TraesCS3B01G304200.1	Wheat	plastid	43.59	50.78
CDY58963	Canola	cytosol	31.28	50.54
CDX88884	Canola	cytosol, plastid	40.77	50.2
Zm00001d038989_P002	Maize	nucleus, plastid	42.43	50.0
CDX92519	Canola	plastid	40.6	49.09
EES19937	Sorghum	mitochondrion	44.93	49.09
TraesCS1A01G392100.1	Wheat	plastid	45.59	48.84
CDX70882	Canola	cytosol	40.93	48.71
TraesCS1D01G400200.2	Wheat	plastid	45.76	48.67
TraesCS1B01G420200.1	Wheat	nucleus, plastid	45.59	48.5
Os01t0675000-01	Rice	mitochondrion	44.26	48.01
Os05t0560100-01	Rice	mitochondrion	45.42	47.98
KXG33101	Sorghum	mitochondrion	44.43	47.76
Zm00001d009549_P002	Maize	mitochondrion	43.59	47.46
CDY57376	Canola	cytosol, extracellular, nucleus	5.49	44.0
Zm00001d043889_P001	Maize	mitochondrion	43.59	43.31
HORVU3Hr1G062030.1	Barley	nucleus, plastid	44.09	42.67
TraesCS3A01G270400.1	Wheat	plastid	44.26	42.29
CDX93028	Canola	nucleus	31.95	40.51
HORVU1Hr1G086590.2	Barley	plastid	44.93	40.06
CDY69871	Canola	cytosol	7.32	39.29
CDX74772	Canola	nucleus, plastid	28.79	38.44
CDY70620	Canola	nucleus	29.95	38.38
CDY18892	Canola	nucleus	28.79	38.27
CDY51157	Canola	nucleus	28.95	38.24
CDY07216	Canola	cytosol	29.95	37.89
CDX85176	Canola	cytosol	33.94	37.29
CDX77457	Canola	cytosol	33.94	37.29
CDY10476	Canola	nucleus	33.94	36.43
CDY40325	Canola	nucleus	33.94	36.43
CDY41197	Canola	cytosol, plastid	31.61	34.3
CDY40246	Canola	cytosol, plastid	31.78	34.29
CDY12411	Canola	cytosol	7.15	33.33
CDX70109	Canola	cytosol	34.78	33.02
CDX98888	Canola	cytosol	34.61	32.6
CDY31706	Canola	cytosol	26.12	31.21
CDX84189	Canola	cytosol	25.46	31.16
CDY62299	Canola	cytosol, nucleus, plastid	27.45	29.46
CDY12303	Canola	nucleus	27.29	29.13
CDX91908	Canola	cytosol	30.12	27.63

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	Gene3D:3.30.740.10	GO:A0A078JKH5	UniProt:A0A078JKH5
EnsemblPlants:CDY67259	ProteinID:CDY67259	ProteinID:CDY67259.1	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0030286
GO:GO:0065009	EnsemblPlantsGene:GSBRNA2T00060518001	InterPro:IPR005512	InterPro:IPR037177	PFAM:PF01221	PFAM:PF03759
InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF10	InterPro:RopGEF	SMART:SM01375
SUPFAM:SSF54648	UniParc:UPI0004EDD3E1	SEG:seg	:	:	:

Description

BnaC06g41060DBnaC06g41060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKH5]

Coordinates

chrLK035909:+:3216..8223

Molecular Weight (calculated)

67641.8 Da

IEP (calculated)

5.694

GRAVY (calculated)

-0.499

Length

601 amino acids

Sequence
(BLAST)

001: MLEGKAMVED SDMPVKMQVQ AMALASQALD LFDVVDCKSI AGHIKKEFDE RYGSGWQCVA LLLLNKTNPE PIYKSRLFHF KNMSEHSASR RVKSWSSDCV
101: DTDNFDEDDN DMMMFRSQPG KASSVDRPSL PLSGGATPNR NDKLAAPRMV SSESMEALQA AMDQMKEKFS KLLLGEDMSG GGKGVSSALA LSNAITNLAA
201: SAFGEQRRLE PMVADRKARW RREIGWLISV ADHIVEFAPT QQTNKDGTSM EVMSTRQRTD LLCNIPALKK LDAMLLDCLD KFKDQNEFYY VKKDSPDSGE
301: TRNDDKWWLP AVKVPPNGLS EISRRFLQSQ KECVNQVLKA AMAINAQVLS EMEIPESYLE SLPKNGRASL GDVIYKMITV EMFDADQFLI EMDLSSEHKI
401: LDLKNRIEAS IVIWKRKMVQ KDTKSAWGST VSTEKREQFE ERAETILLLL KLGFPGISQS TLDITKIQCN RDVGLAILES YSRVLESLAH TVMSRIEDVL
501: YADQLTQEPT NASSKNRYTV IETEKPKEER ISFSEERLSG TSLSDVMQWG NKNNEVKKES YYGGDKEKPL LSKVTGIMTT NKKSSYLENL GTMRSPTARY
601: S

Best Arabidopsis Sequence Match ( AT1G52240.1 )
(BLAST)

001: MVKAMEQEQE TYKSRLFHFK NMNENSASRH VKSWSSDCAM RMDGSDNLDD DDNDMMMFRS QPGKCGSVDR PSLPIGGVTP NRNDKLPRVS SSDSMEALII
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS

Arabidopsis Description

ROPGEF11ROPGEF11 [Source:UniProtKB/TrEMBL;Acc:A0A178W8V0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.