Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12037 | Canola | nucleus | 95.07 | 95.07 |
| AT1G34570.1 | Thale cress | nucleus | 71.43 | 69.71 |
| AT3G15750.1 | Thale cress | nucleus | 64.04 | 65.33 |
| KRH24407 | Soybean | nucleus | 36.45 | 34.74 |
| Solyc01g068450.2.1 | Tomato | nucleus | 32.51 | 32.67 |
| PGSC0003DMT400059770 | Potato | nucleus | 29.06 | 32.6 |
| HORVU3Hr1G107330.1 | Barley | nucleus | 30.05 | 30.96 |
| TraesCS3D01G486000.1 | Wheat | nucleus | 27.59 | 30.77 |
| TraesCS7D01G049900.2 | Wheat | nucleus | 28.08 | 29.53 |
| TraesCS3B01G540300.1 | Wheat | nucleus | 25.62 | 28.89 |
| EES04224 | Sorghum | nucleus | 29.56 | 28.3 |
| TraesCS3B01G540900.1 | Wheat | cytosol | 29.06 | 28.23 |
| Os01t0950800-01 | Rice | nucleus | 29.06 | 28.1 |
| KRH29386 | Soybean | nucleus | 36.95 | 28.09 |
| TraesCS7A01G054800.2 | Wheat | cytosol, mitochondrion, nucleus | 26.6 | 27.84 |
| TraesCS3D01G485500.1 | Wheat | cytosol | 27.59 | 27.18 |
| HORVU7Hr1G009930.1 | Barley | cytosol, nucleus | 26.6 | 27.0 |
| Zm00001d011873_P001 | Maize | nucleus | 27.59 | 26.05 |
| Os10t0580500-00 | Rice | mitochondrion | 24.14 | 21.78 |
| Zm00001d042093_P001 | Maize | extracellular, golgi | 26.11 | 15.63 |
Protein Annotations
| EnsemblPlants:CDY03143 | EnsemblPlantsGene:GSBRNA2T00115570001 | InterPro:Essential_protein_Yae1_N | InterPro:Yae1-like | PANTHER:PTHR18829 | PFAM:PF09811 |
| ProteinID:CDY03143 | ProteinID:CDY03143.1 | SEG:seg | UniParc:UPI0004EF41CD | MapMan:35.2 | : |
Description
BnaC06g08300D
Coordinates
chrLK031940:+:966055..967966
Molecular Weight (calculated)
22343.7 Da
IEP (calculated)
4.375
GRAVY (calculated)
-0.669
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPPEDDKSN FAKELYGEGL QLSKPGNDDH NLEGLDGSFF GSSDDEPSEV YSMNKETEKI RDKFHTVGYR DGISAGQEAA AQEGYNVGYR ESVLAGYKFG
101: IVRGVSSAIA FLPDELREKL IDEQETKYKF RKLHDSVHAL STEAAMKVFY GTLTTKQVED KSGEEGSDSS LASVTSTTDL ASYVSELSSL LDKSPKIEVR
201: LDT
101: IVRGVSSAIA FLPDELREKL IDEQETKYKF RKLHDSVHAL STEAAMKVFY GTLTTKQVED KSGEEGSDSS LASVTSTTDL ASYVSELSSL LDKSPKIEVR
201: LDT
001: MEPPEDGKVN FAKELYGESL QISKLSNKDH GLENLDDPFY GSSDEDYSEA RVLDNENEQR RVKFHSAGYR DGIVVGKEAI AQEGYNFGYK ESVLAGYKFG
101: IVRGVSSALA FLPVEFREKL IDEQETREKF QKLHSSVHAL STEVAMKQFY ETLTTKQGEE KSGEEGPDSC SVSGSCSGVN VTADLGSYVT ELSSLLDKSP
201: TIEVKFDT
101: IVRGVSSALA FLPVEFREKL IDEQETREKF QKLHSSVHAL STEVAMKQFY ETLTTKQGEE KSGEEGPDSC SVSGSCSGVN VTADLGSYVT ELSSLLDKSP
201: TIEVKFDT
Arabidopsis Description
Essential protein Yae1, N-terminal [Source:UniProtKB/TrEMBL;Acc:F4HV08]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.