Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G15750.1 | Thale cress | nucleus | 82.21 | 85.93 |
| CDY03143 | Canola | nucleus | 69.71 | 71.43 |
| CDY12037 | Canola | nucleus | 68.27 | 69.95 |
| Bra028059.1-P | Field mustard | cytosol | 65.87 | 59.83 |
| Bra036754.1-P | Field mustard | nucleus | 67.31 | 48.95 |
| KRH24407 | Soybean | nucleus | 36.54 | 35.68 |
| HORVU3Hr1G107330.1 | Barley | nucleus | 28.85 | 30.46 |
| PGSC0003DMT400059770 | Potato | nucleus | 26.44 | 30.39 |
| Solyc01g068450.2.1 | Tomato | nucleus | 28.37 | 29.21 |
| KRH29386 | Soybean | nucleus | 36.54 | 28.46 |
| EES04224 | Sorghum | nucleus | 28.85 | 28.3 |
| TraesCS7D01G049900.2 | Wheat | nucleus | 25.96 | 27.98 |
| Os01t0950800-01 | Rice | nucleus | 27.88 | 27.62 |
| Zm00001d011873_P001 | Maize | nucleus | 27.88 | 26.98 |
| TraesCS3D01G485500.1 | Wheat | cytosol | 26.44 | 26.7 |
| HORVU7Hr1G009930.1 | Barley | cytosol, nucleus | 25.48 | 26.5 |
| TraesCS3D01G486000.1 | Wheat | nucleus | 23.08 | 26.37 |
| TraesCS7A01G054800.2 | Wheat | cytosol, mitochondrion, nucleus | 24.52 | 26.29 |
| TraesCS3B01G540300.1 | Wheat | nucleus | 22.6 | 26.11 |
| TraesCS3B01G540900.1 | Wheat | cytosol | 25.96 | 25.84 |
| Os10t0580500-00 | Rice | mitochondrion | 25.0 | 23.11 |
| Zm00001d042093_P001 | Maize | extracellular, golgi | 28.37 | 17.4 |
Protein Annotations
| MapMan:35.2 | EntrezGene:840360 | ProteinID:AEE31726.1 | ArrayExpress:AT1G34570 | EnsemblPlantsGene:AT1G34570 | RefSeq:AT1G34570 |
| TAIR:AT1G34570 | RefSeq:AT1G34570-TAIR-G | EnsemblPlants:AT1G34570.1 | TAIR:AT1G34570.1 | InterPro:Essential_protein_Yae1_N | UniProt:F4HV08 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006412 |
| GO:GO:0006413 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016491 |
| GO:GO:0016614 | GO:GO:0019538 | GO:GO:0042273 | GO:GO:0050660 | GO:GO:0055114 | RefSeq:NP_564448.1 |
| PFAM:PF09811 | PO:PO:0000293 | PANTHER:PTHR18829 | UniParc:UPI0000162F95 | InterPro:Yae1-like | SEG:seg |
Description
Essential protein Yae1, N-terminal [Source:UniProtKB/TrEMBL;Acc:F4HV08]
Coordinates
chr1:-:12654927..12656605
Molecular Weight (calculated)
23033.6 Da
IEP (calculated)
4.431
GRAVY (calculated)
-0.608
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPPEDGKVN FAKELYGESL QISKLSNKDH GLENLDDPFY GSSDEDYSEA RVLDNENEQR RVKFHSAGYR DGIVVGKEAI AQEGYNFGYK ESVLAGYKFG
101: IVRGVSSALA FLPVEFREKL IDEQETREKF QKLHSSVHAL STEVAMKQFY ETLTTKQGEE KSGEEGPDSC SVSGSCSGVN VTADLGSYVT ELSSLLDKSP
201: TIEVKFDT
101: IVRGVSSALA FLPVEFREKL IDEQETREKF QKLHSSVHAL STEVAMKQFY ETLTTKQGEE KSGEEGPDSC SVSGSCSGVN VTADLGSYVT ELSSLLDKSP
201: TIEVKFDT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.