Factsheet for Zm00001d012691_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular, cytosol

Predictor Summary:

mitochondrion 3
extracellular 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000402_P001
Zm00001d002027_P002
Zm00001d002501_P001
Zm00001d003996_P001
Zm00001d008330_P001
Zm00001d011873_P001
Zm00001d012392_P001
Zm00001d016016_P001
Zm00001d016248_P001
Zm00001d018693_P001
Zm00001d023606_P005
Zm00001d025208_P002
Zm00001d036201_P001
Zm00001d040291_P001
Zm00001d041839_P001
Zm00001d042093_P001
Zm00001d043386_P001
Zm00001d045735_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52240.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT1G52240.1	Zm00001d023606_P005	AT1G34430.1	21798944
AT1G52240.1	Zm00001d041839_P001	AT1G34430.1	21798944
AT1G52240.1	Zm00001d011873_P001	AT1G34570.1	21798944
AT1G52240.1	Zm00001d042093_P001	AT1G34570.1	21798944
AT1G52240.1	Zm00001d016248_P001	AT2G42790.1	21798944
AT1G52240.1	Zm00001d018693_P001	AT3G06430.1	21798944
AT1G52240.1	Zm00001d016016_P001	AT3G16120.1	21798944
AT1G52240.1	Zm00001d043386_P001	AT3G16120.1	21798944
AT1G52240.1	Zm00001d002501_P001	AT3G17668.1	21798944
AT1G52240.1	Zm00001d008330_P001	AT4G15930.1	21798944
AT1G52240.1	Zm00001d040291_P001	AT4G15930.1	21798944
AT1G52240.1	Zm00001d036201_P001	AT4G32960.1	21798944
AT1G52240.1	Zm00001d000402_P001	AT5G22310.1	21798944
AT1G52240.1	Zm00001d003996_P001	AT5G22310.1	21798944
AT1G52240.1	Zm00001d025208_P002	AT5G22310.1	21798944
AT1G52240.1	Zm00001d045735_P002	AT5G57660.1	21798944
AT1G52240.1	Zm00001d012392_P001	AT5G64960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G296400.1	Wheat	cytosol	77.7	48.27
TraesCS3B01G331000.1	Wheat	nucleus	77.0	47.53
TraesCS3A01G305500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	77.0	47.02
HORVU3Hr1G073200.1	Barley	nucleus	75.96	45.8
OQU87589	Sorghum	nucleus	81.53	45.26
Zm00001d043383_P001	Maize	nucleus	82.23	45.12
Os01t0760300-01	Rice	plasma membrane	77.35	42.61
Zm00001d053307_P002	Maize	cytosol, plastid	56.79	33.75
Bra021162.1-P	Field mustard	nucleus	49.83	32.95
Zm00001d016001_P002	Maize	mitochondrion	57.84	31.09
Zm00001d038989_P002	Maize	nucleus, plastid	53.31	30.0
CDY45633	Canola	nucleus	54.01	29.64
Bra018956.1-P	Field mustard	nucleus	55.05	29.48
AT1G52240.1	Thale cress	nucleus	55.4	29.28
Zm00001d006269_P001	Maize	cytosol	39.02	29.17
Bra030396.1-P	Field mustard	nucleus	54.01	28.86
Bra027189.1-P	Field mustard	nucleus	52.61	28.49
CDX97723	Canola	nucleus	52.26	28.2
Zm00001d009549_P002	Maize	mitochondrion	53.66	27.9
CDX87879	Canola	nucleus	54.01	27.83
Zm00001d043889_P001	Maize	mitochondrion	58.19	27.6
CDY30136	Canola	nucleus	52.61	27.45
AT3G16130.1	Thale cress	nucleus	50.17	26.77
CDY67259	Canola	nucleus	55.05	26.29
CDY52982	Canola	nucleus	55.05	26.29
CDY28381	Canola	nucleus	50.52	24.21
CDY20181	Canola	nucleus	50.17	23.72
Zm00001d002696_P001	Maize	cytosol	36.93	22.94
Zm00001d047899_P001	Maize	cytosol	21.95	22.66
Zm00001d029850_P001	Maize	nucleus, plastid	37.63	22.09
Zm00001d042861_P001	Maize	cytosol	43.55	21.82
Zm00001d021489_P001	Maize	nucleus, plastid	35.19	21.77
Zm00001d010062_P001	Maize	peroxisome	42.16	20.97
Zm00001d021464_P002	Maize	nucleus, plastid	41.81	20.8
Zm00001d051553_P004	Maize	cytosol	32.4	17.22
Zm00001d017755_P002	Maize	cytosol	32.4	17.19
Zm00001d023356_P001	Maize	cytosol	20.56	16.62
Zm00001d037119_P001	Maize	plastid	22.3	14.85
Zm00001d049679_P001	Maize	plastid	21.25	13.8
Bra021161.1-P	Field mustard	nucleus	0.35	0.75

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	UniProt:A0A1D6GB37	ProteinID:AQL00304.1	GO:GO:0003674	GO:GO:0005085
GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512
PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF26	InterPro:RopGEF
SignalP:SignalP-noTM	UniParc:UPI00084263D7	EnsemblPlantsGene:Zm00001d012691	EnsemblPlants:Zm00001d012691_P001	EnsemblPlants:Zm00001d012691_T001	SEG:seg

Description

Rop guanine nucleotide exchange factor 9

Coordinates

chr8:-:178707473..178709709

Molecular Weight (calculated)

32282.7 Da

IEP (calculated)

9.088

GRAVY (calculated)

-0.363

Length

287 amino acids

Sequence
(BLAST)

001: MEVLIGLHLL HLRAAVTLSS ARHTQLMGTQ QRRDLQANIP ALRKLDTMLL RVRTSQERAN EKWWIPIVNV PPGGLSPTSR AWLLHQKELV NQVLKAAMAI
101: NANCLNMENG RASLGDALYR VITDVEFDPN DFLSTMDLTS EHKILDLKDR IEASVIIWNR KVHNKDSKSS WGSAVSQEKR EQFEERAQTL LLILKHRHRF
201: PGIPLSALDI AKIQENRDVG FALLESYSRV LESLAFNVMS RIEDVVQTDN LARDIAKKNA PPAADPAART RAGWNGDAEG KNDDASF

Best Arabidopsis Sequence Match ( AT1G52240.1 )
(BLAST)

001: MVKAMEQEQE TYKSRLFHFK NMNENSASRH VKSWSSDCAM RMDGSDNLDD DDNDMMMFRS QPGKCGSVDR PSLPIGGVTP NRNDKLPRVS SSDSMEALII
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS

Arabidopsis Description

ROPGEF11ROPGEF11 [Source:UniProtKB/TrEMBL;Acc:A0A178W8V0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.