Factsheet for Os01t0760300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0201000-01
Os01t0256400-01
Os01t0950800-01
Os02t0232400-01
Os02t0269200-01
Os02t0506100-00
Os03t0309800-02
Os04t0382800-00
Os04t0589200-01
Os04t0654700-02
Os06t0150100-01
Os06t0275000-01
Os06t0492700-00
Os08t0453800-00
Os10t0580500-00
Os12t0182200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52240.1	Os04t0654700-02	AT1G22920.1	21798944
AT1G52240.1	Os12t0182200-01	AT1G34430.1	21798944
AT1G52240.1	Os01t0950800-01	AT1G34570.1	21798944
AT1G52240.1	Os10t0580500-00	AT1G34570.1	21798944
AT1G52240.1	Os02t0232400-01	AT2G42790.1	21798944
AT1G52240.1	Os03t0309800-02	AT3G06430.1	21798944
AT1G52240.1	Os02t0269200-01	AT3G16120.1	21798944
AT1G52240.1	Os04t0589200-01	AT3G17668.1	21798944
AT1G52240.1	Os01t0256400-01	AT4G15930.1	21798944
AT1G52240.1	Os06t0492700-00	AT4G15930.1	21798944
AT1G52240.1	Os06t0150100-01	AT4G32960.1	21798944
AT1G52240.1	Os02t0506100-00	AT5G22310.1	21798944
AT1G52240.1	Os04t0382800-00	AT5G22310.1	21798944
AT1G52240.1	Os06t0275000-01	AT5G57660.1	21798944
AT1G52240.1	Os01t0201000-01	AT5G64960.1	21798944
AT1G52240.1	Os08t0453800-00	AT5G64960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G073200.1	Barley	nucleus	74.09	81.09
TraesCS3D01G296400.1	Wheat	cytosol	71.78	80.95
TraesCS3B01G331000.1	Wheat	nucleus	72.17	80.86
Zm00001d043383_P001	Maize	nucleus	79.46	79.16
OQU87589	Sorghum	nucleus	78.12	78.72
TraesCS3A01G305500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	69.87	77.45
Zm00001d012691_P001	Maize	cytosol, extracellular, mitochondrion, plastid	42.61	77.35
Os02t0272300-01	Rice	plasma membrane	53.55	54.39
CDY45633	Canola	nucleus	51.25	51.05
Bra018956.1-P	Field mustard	nucleus	52.4	50.93
AT1G52240.1	Thale cress	nucleus	52.98	50.83
Bra021162.1-P	Field mustard	nucleus	42.23	50.69
Bra030396.1-P	Field mustard	nucleus	51.44	49.91
Os01t0675000-01	Rice	mitochondrion	52.02	48.92
Os05t0560100-01	Rice	mitochondrion	52.59	48.15
CDX87879	Canola	nucleus	51.25	47.94
Bra027189.1-P	Field mustard	nucleus	46.64	45.85
AT3G16130.1	Thale cress	nucleus	47.02	45.54
CDY67259	Canola	nucleus	52.4	45.42
CDY52982	Canola	nucleus	52.4	45.42
CDX97723	Canola	nucleus	46.26	45.3
CDY30136	Canola	nucleus	47.02	44.55
CDY28381	Canola	nucleus	46.45	40.4
CDY20181	Canola	nucleus	46.64	40.03
Os07t0481100-01	Rice	cytosol	33.59	38.04
Os01t0849100-01	Rice	cytosol	39.35	37.55
Os04t0559100-00	Rice	cytosol	12.86	36.81
Os10t0550300-00	Rice	plastid	33.78	36.74
Os09t0544800-01	Rice	nucleus	39.54	36.72
Os05t0454200-01	Rice	nucleus	37.81	34.68
Os02t0702600-02	Rice	cytosol	30.33	29.1
Bra021161.1-P	Field mustard	nucleus	2.5	9.77

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	EntrezGene:4325619	EMBL:AK070142	ProteinID:BAB61208.1
ProteinID:BAB92353.1	ProteinID:BAF06229.1	ProteinID:BAS74447.1	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	InterPro:IPR005512	EnsemblPlantsGene:Os01g0760300	EnsemblPlants:Os01t0760300-01
PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF26	UniProt:Q94DS9
InterPro:RopGEF	UniParc:UPI00000ABBD5	RefSeq:XP_015628594.1	SEG:seg	:	:

Description

guanine nucleotide exchange factor for Rop 8Similar to Pollen-specific kinase partner protein. (Os01t0760300-01)

Coordinates

chr1:+:31986501..31989198

Molecular Weight (calculated)

57542.4 Da

IEP (calculated)

5.839

GRAVY (calculated)

-0.550

Length

521 amino acids

Sequence
(BLAST)

001: MAASGGGSLL ERRSSVRRSQ SMVSEEGRGT PADEDLGGGG TLKIGAVLDK DSAAPKSRLA KDTGEHGGGG PSEMELMKEK FAKLLLGEDM SGSGKGVPSA
101: LAVSNAITNL AASVFGEQRK LEPMAPDRKG RWKKEVGWLL SVADHIVEFV AKKQVLDNGV EMEVMGTQQR RDLQANIPAL RKIDTMLLDY LDNFKDRNEF
201: WYVKRDSCSD SDEQRSDEKW WIPIVKVPPG GLSPASRGWL QHQKELVNQV LKAAMAINAN CLMEMAIPES YLESLPKNGR ASLGDALYRI ITDVEFDPDV
301: FLSTVDLTSE HKILDLKDRI EASVIIWNRK VHNKDGKSAW GSAVSQEKRE QFEERAQTLL LIIKHRYPGI PQSTLDIAKI QENRDVGFAI LESYSRVLES
401: LAFNVMSRIE DVLNADDHAR EKAKKEAPPA PAMANDAAEH HHQQAGEVDA PCKMTGSPNG RTLLDFMDDW NGDADRPSPT APEPAAQEDG RLMKLPNIMT
501: NLKQTYMDNL FGAHRSPPGR H

Best Arabidopsis Sequence Match ( AT1G52240.1 )
(BLAST)

001: MVKAMEQEQE TYKSRLFHFK NMNENSASRH VKSWSSDCAM RMDGSDNLDD DDNDMMMFRS QPGKCGSVDR PSLPIGGVTP NRNDKLPRVS SSDSMEALII
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS

Arabidopsis Description

ROPGEF11ROPGEF11 [Source:UniProtKB/TrEMBL;Acc:A0A178W8V0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.