Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021162.1-P | Field mustard | nucleus | 65.43 | 81.11 |
| Bra027189.1-P | Field mustard | nucleus | 76.77 | 77.92 |
| CDX97723 | Canola | nucleus | 76.02 | 76.88 |
| CDY30136 | Canola | nucleus | 76.95 | 75.27 |
| CDY28381 | Canola | nucleus | 77.51 | 69.62 |
| CDY20181 | Canola | nucleus | 77.51 | 68.7 |
| AT1G52240.1 | Thale cress | nucleus | 64.13 | 63.54 |
| AT1G79860.1 | Thale cress | nucleus | 51.86 | 54.17 |
| Zm00001d012691_P001 | Maize | cytosol, extracellular, mitochondrion, plastid | 26.77 | 50.17 |
| TraesCS3D01G296400.1 | Wheat | cytosol | 42.75 | 49.78 |
| AT3G24620.1 | Thale cress | nucleus | 48.14 | 49.52 |
| TraesCS3B01G331000.1 | Wheat | nucleus | 42.75 | 49.46 |
| HORVU3Hr1G073200.1 | Barley | nucleus | 43.12 | 48.74 |
| Zm00001d043383_P001 | Maize | nucleus | 46.28 | 47.61 |
| OQU87589 | Sorghum | nucleus | 45.72 | 47.58 |
| TraesCS3A01G305500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 41.45 | 47.45 |
| Os01t0760300-01 | Rice | plasma membrane | 45.54 | 47.02 |
| AT4G13240.1 | Thale cress | nucleus | 45.17 | 47.0 |
| TraesCS3D01G270200.1 | Wheat | plastid | 43.31 | 44.98 |
| TraesCS3B01G304200.1 | Wheat | plastid | 43.12 | 44.96 |
| EES19937 | Sorghum | mitochondrion | 45.72 | 44.73 |
| Zm00001d038989_P002 | Maize | nucleus, plastid | 41.64 | 43.92 |
| Os05t0560100-01 | Rice | mitochondrion | 46.28 | 43.76 |
| TraesCS1A01G392100.1 | Wheat | plastid | 45.54 | 43.67 |
| TraesCS1D01G400200.2 | Wheat | plastid | 45.54 | 43.36 |
| Os01t0675000-01 | Rice | mitochondrion | 44.42 | 43.14 |
| AT5G19560.4 | Thale cress | mitochondrion | 40.89 | 42.97 |
| Bra021161.1-P | Field mustard | nucleus | 10.59 | 42.86 |
| TraesCS1B01G420200.1 | Wheat | nucleus, plastid | 44.8 | 42.65 |
| Zm00001d009549_P002 | Maize | mitochondrion | 43.49 | 42.39 |
| KXG33101 | Sorghum | mitochondrion | 43.12 | 41.5 |
| Zm00001d043889_P001 | Maize | mitochondrion | 42.38 | 37.69 |
| TraesCS3A01G270400.1 | Wheat | plastid | 43.49 | 37.2 |
| AT2G45890.1 | Thale cress | nucleus, plastid | 31.97 | 37.15 |
| HORVU3Hr1G062030.1 | Barley | nucleus, plastid | 42.75 | 37.04 |
| AT5G02010.1 | Thale cress | nucleus | 36.62 | 36.08 |
| AT4G00460.2 | Thale cress | nucleus | 31.6 | 35.94 |
| HORVU1Hr1G086590.2 | Barley | plastid | 44.61 | 35.61 |
| AT4G38430.1 | Thale cress | nucleus | 35.5 | 34.85 |
| AT5G05940.1 | Thale cress | cytosol | 37.73 | 33.22 |
| AT1G01700.4 | Thale cress | nucleus | 31.78 | 33.2 |
| AT3G55660.1 | Thale cress | cytosol, plastid | 34.2 | 31.78 |
| AT1G31650.1 | Thale cress | mitochondrion, nucleus | 31.04 | 28.99 |
Protein Annotations
| Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | EntrezGene:820858 | UniProt:A0A2H1ZEI1 | ProteinID:AEE75775.2 | ArrayExpress:AT3G16130 |
| EnsemblPlantsGene:AT3G16130 | RefSeq:AT3G16130 | TAIR:AT3G16130 | RefSeq:AT3G16130-TAIR-G | EnsemblPlants:AT3G16130.1 | TAIR:AT3G16130.1 |
| Symbol:ATROPGEF13 | GO:GO:0003674 | GO:GO:0005085 | GO:GO:0005089 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | GO:GO:0065009 | InterPro:IPR005512 | RefSeq:NP_001319564.1 | PFAM:PF03759 | PO:PO:0000293 |
| PO:PO:0001017 | PO:PO:0009046 | PO:PO:0025195 | PO:PO:0025281 | InterPro:PRONE_dom | PFscan:PS51334 |
| PANTHER:PTHR33101 | PANTHER:PTHR33101:SF10 | InterPro:RopGEF | UniParc:UPI0008489203 | SEG:seg | : |
Description
ATROPGEF13RHO guanyl-nucleotide exchange factor 13 [Source:TAIR;Acc:AT3G16130]
Coordinates
chr3:+:5466246..5468774
Molecular Weight (calculated)
61448.2 Da
IEP (calculated)
5.084
GRAVY (calculated)
-0.630
Length
538 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKASEKEHE KYKPKLFDLE NVKKKNSSSR HFKRWNSDSA LRIEDPDIDD GTVFKKTATS SIQPILPVLA MDEQPQPREA TDEESQKDSE LEQMKDKFAK
101: LLLGEDMSGG SKGVSSALAL SNAITNLAAS AFGEIRRLEA ISEDKKERWR REIGWLLSVT DHIVEFSPTH QTNEDGSSME VMTTKQRTDL VSNIPSLKKL
201: DEMLLDCLDK FKDQDEFYYV TPGSPESENS NSTRNDDKWW LPIVKVPPKG LSETLKRFLL SQRECVCQVL NSAMAINSQV LTEMEIPESY IDSLPKKGRA
301: SLGDMIYRMI TLEMFDAEQF LLEMDLSSEH KILDLKNKFE ASVVIWQRKI VQIDNKSSSP WSTNLSMDKR QQLEERAATI LQLIKQEFPG ISQSTLDISK
401: IQFNRDIGLA IVESYSRILE SLAHTVMSRI EDVLEADQLT QNPELAMCKI HIVKETESPE KEEEPNFCLL EDRPKKQKPT ISLSEVMQWN IETNEPRKEK
501: SDKKLLTRVS SMIMSNNKKT TYLESLGTTR SPTAGRYS
101: LLLGEDMSGG SKGVSSALAL SNAITNLAAS AFGEIRRLEA ISEDKKERWR REIGWLLSVT DHIVEFSPTH QTNEDGSSME VMTTKQRTDL VSNIPSLKKL
201: DEMLLDCLDK FKDQDEFYYV TPGSPESENS NSTRNDDKWW LPIVKVPPKG LSETLKRFLL SQRECVCQVL NSAMAINSQV LTEMEIPESY IDSLPKKGRA
301: SLGDMIYRMI TLEMFDAEQF LLEMDLSSEH KILDLKNKFE ASVVIWQRKI VQIDNKSSSP WSTNLSMDKR QQLEERAATI LQLIKQEFPG ISQSTLDISK
401: IQFNRDIGLA IVESYSRILE SLAHTVMSRI EDVLEADQLT QNPELAMCKI HIVKETESPE KEEEPNFCLL EDRPKKQKPT ISLSEVMQWN IETNEPRKEK
501: SDKKLLTRVS SMIMSNNKKT TYLESLGTTR SPTAGRYS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.