Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G304200.1 | Wheat | plastid | 96.33 | 96.71 |
| TraesCS3A01G270400.1 | Wheat | plastid | 94.59 | 77.9 |
| HORVU3Hr1G062030.1 | Barley | nucleus, plastid | 89.38 | 74.56 |
| Os01t0675000-01 | Rice | mitochondrion | 74.32 | 69.49 |
| KXG33101 | Sorghum | mitochondrion | 69.11 | 64.04 |
| Zm00001d043889_P001 | Maize | mitochondrion | 69.11 | 59.17 |
| TraesCS3D01G296400.1 | Wheat | cytosol | 49.81 | 55.84 |
| TraesCS6D01G183300.1 | Wheat | mitochondrion | 51.74 | 52.65 |
| TraesCS1D01G400200.2 | Wheat | plastid | 55.41 | 50.8 |
| Bra021162.1-P | Field mustard | nucleus | 41.89 | 50.0 |
| CDY45633 | Canola | nucleus | 50.0 | 49.52 |
| Bra018956.1-P | Field mustard | nucleus | 50.97 | 49.25 |
| AT1G52240.1 | Thale cress | nucleus | 51.16 | 48.8 |
| Bra030396.1-P | Field mustard | nucleus | 50.19 | 48.42 |
| CDX87879 | Canola | nucleus | 50.0 | 46.5 |
| Bra027189.1-P | Field mustard | nucleus | 45.95 | 44.91 |
| CDX97723 | Canola | nucleus | 45.95 | 44.74 |
| CDY67259 | Canola | nucleus | 50.97 | 43.93 |
| CDY52982 | Canola | nucleus | 50.97 | 43.93 |
| CDY30136 | Canola | nucleus | 46.33 | 43.64 |
| AT3G16130.1 | Thale cress | nucleus | 44.98 | 43.31 |
| TraesCS5D01G346100.1 | Wheat | cytosol | 38.03 | 40.7 |
| CDY28381 | Canola | nucleus | 46.53 | 40.23 |
| CDY20181 | Canola | nucleus | 46.14 | 39.37 |
| TraesCS2D01G405400.1 | Wheat | nucleus | 35.14 | 38.72 |
| TraesCS1D01G211900.1 | Wheat | nucleus | 34.75 | 37.74 |
| TraesCS3D01G357800.1 | Wheat | cytosol | 38.8 | 37.36 |
| TraesCS6D01G388300.1 | Wheat | nucleus | 33.59 | 37.26 |
| TraesCS1D01G280000.1 | Wheat | cytosol | 37.64 | 34.88 |
| TraesCS6D01G244200.1 | Wheat | cytosol | 30.7 | 29.28 |
| Bra021161.1-P | Field mustard | nucleus | 2.51 | 9.77 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G270200.1 | EnsemblPlantsGene:TraesCS3D01G270200 | Gene3D:1.20.58.1310 | Gene3D:1.20.58.2010 | GO:GO:0003674 | GO:GO:0005089 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR005512 | InterPro:PRONE_dom | InterPro:RopGEF | PANTHER:PTHR33101 |
| PANTHER:PTHR33101:SF10 | PFAM:PF03759 | PFscan:PS51334 | SEG:seg | MapMan:27.4.3.1 | : |
Description
No Description!
Coordinates
chr3D:-:374928928..374931162
Molecular Weight (calculated)
57594.3 Da
IEP (calculated)
7.188
GRAVY (calculated)
-0.492
Length
518 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSPSLISS SFSSSSRLLR SSSSSSSQCS TSGRRSMDEE AEAVVAPLPP MQKRVLSRSH GSRAAPGRQL PPKNVVRDAG PPSEMDLMKE RFAKLLLGED
101: MSGTGKGVSS ALALSNSITN LAASVFGEQR RLEPMSADRK ARWKKEIGWL LSVTDHIVEF VPLQQVSEDG TSMEVMGTQL RRDILMNIPA LRKLDAMLLG
201: YLDNFKDEQE YWYVSKNANE SEKGDAPRDG EKWWIPTVRV PPEGLSDQSR RWLQHQQDLV GQVLKAAMAI NADVLAQMEI PEEYIEALPK NGRESLGDSI
301: YRTITDDYFD PNGLLDSVDL STGHKIVDLK DRIEASVVIW QRKLCNKLSW GPGVSLEKRE QFEERAQTVL LILKHKFPGS AQSSLDISKI QYNKDVGFAI
401: LESYSRALES LAFAVLSRIE DVLYADTVAR DPRRAKSRRR PSLEDDSTES LVVDATEATS AKSSDSFCWQ ELEDRSLDSG GGKLRKIPRI GRRKSMHVDK
501: VEVNVCGVGA GSRSFSHR
101: MSGTGKGVSS ALALSNSITN LAASVFGEQR RLEPMSADRK ARWKKEIGWL LSVTDHIVEF VPLQQVSEDG TSMEVMGTQL RRDILMNIPA LRKLDAMLLG
201: YLDNFKDEQE YWYVSKNANE SEKGDAPRDG EKWWIPTVRV PPEGLSDQSR RWLQHQQDLV GQVLKAAMAI NADVLAQMEI PEEYIEALPK NGRESLGDSI
301: YRTITDDYFD PNGLLDSVDL STGHKIVDLK DRIEASVVIW QRKLCNKLSW GPGVSLEKRE QFEERAQTVL LILKHKFPGS AQSSLDISKI QYNKDVGFAI
401: LESYSRALES LAFAVLSRIE DVLYADTVAR DPRRAKSRRR PSLEDDSTES LVVDATEATS AKSSDSFCWQ ELEDRSLDSG GGKLRKIPRI GRRKSMHVDK
501: VEVNVCGVGA GSRSFSHR
001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH
Arabidopsis Description
ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.