Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G061500.1 | Wheat | cytosol | 95.24 | 95.24 |
| TraesCS7D01G056400.1 | Wheat | cytosol | 94.29 | 94.29 |
| Os02t0269200-01 | Rice | cytosol | 83.81 | 88.89 |
| EES06648 | Sorghum | cytosol | 81.9 | 86.87 |
| TraesCS4A01G428300.1 | Wheat | cytosol | 99.05 | 77.61 |
| Zm00001d016016_P001 | Maize | cytosol | 83.81 | 73.33 |
| GSMUA_Achr7P25190_001 | Banana | cytosol | 63.81 | 72.04 |
| CDY02551 | Canola | cytosol | 63.81 | 71.28 |
| AT1G52245.1 | Thale cress | cytosol | 63.81 | 71.28 |
| Bra014318.1-P | Field mustard | cytosol | 63.81 | 71.28 |
| Bra018957.1-P | Field mustard | cytosol | 62.86 | 70.21 |
| CDY30135 | Canola | cytosol | 61.9 | 69.89 |
| Bra027190.1-P | Field mustard | cytosol | 61.9 | 69.89 |
| CDX97722 | Canola | cytosol | 61.9 | 69.89 |
| TraesCS3A01G305600.1 | Wheat | cytosol | 65.71 | 69.7 |
| KRH09878 | Soybean | cytosol | 62.86 | 69.47 |
| KRH23441 | Soybean | cytosol | 61.9 | 68.42 |
| Solyc12g044240.1.1 | Tomato | cytosol | 60.95 | 68.09 |
| AT3G16120.1 | Thale cress | cytosol | 60.0 | 67.74 |
| PGSC0003DMT400019607 | Potato | cytosol | 60.0 | 67.02 |
| Solyc03g120690.2.1 | Tomato | cytosol | 59.05 | 65.96 |
| KRH60274 | Soybean | cytosol | 58.1 | 65.59 |
| PGSC0003DMT400006527 | Potato | cytosol | 58.1 | 64.89 |
| TraesCS2A01G245600.1 | Wheat | cytosol | 60.95 | 64.65 |
| KRH41561 | Soybean | cytosol | 57.14 | 64.52 |
| VIT_09s0002g04280.t01 | Wine grape | cytosol | 58.1 | 64.21 |
| VIT_11s0016g03770.t01 | Wine grape | cytosol | 57.14 | 62.5 |
| HORVU7Hr1G011400.2 | Barley | plastid | 96.19 | 62.35 |
| TraesCS7A01G284100.1 | Wheat | cytosol, plastid | 50.48 | 60.92 |
| CDY47528 | Canola | cytosol | 57.14 | 46.15 |
| TraesCS6A01G295200.1 | Wheat | cytosol | 32.38 | 22.97 |
| TraesCS3A01G175300.1 | Wheat | cytosol | 28.57 | 21.28 |
| TraesCS2A01G337200.1 | Wheat | cytosol | 34.29 | 20.57 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G427300.1 | EnsemblPlantsGene:TraesCS4A01G427300 | Gene3D:3.30.740.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005856 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030286 | InterPro:DLC_sf |
| InterPro:Dynein_light_chain_typ-1/2 | InterPro:IPR037177 | PANTHER:PTHR11886 | PANTHER:PTHR11886:SF48 | PFAM:PF01221 | SEG:seg |
| SMART:SM01375 | SUPFAM:SSF54648 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4A:+:698175294..698175702
Molecular Weight (calculated)
11214.3 Da
IEP (calculated)
5.005
GRAVY (calculated)
0.312
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEGKAVVED TDMPARMQAA ATSAASRALD LFDVDDCRAI AGHIKTEFDR RYGVGWQCVV GASFGCFFTH SSGTFIYFSL ERLTFLLFKA AAVAAAASCD
101: TSGIS
101: TSGIS
1: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFQL ETLKFLIFKG ASTP
Arabidopsis Description
At1g52250 [Source:UniProtKB/TrEMBL;Acc:Q9M810]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.