Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G427300.1 | Wheat | cytosol | 94.29 | 94.29 |
| TraesCS7A01G061500.1 | Wheat | cytosol | 93.33 | 93.33 |
| Os02t0269200-01 | Rice | cytosol | 80.95 | 85.86 |
| EES06648 | Sorghum | cytosol | 79.05 | 83.84 |
| TraesCS4A01G428300.1 | Wheat | cytosol | 94.29 | 73.88 |
| Zm00001d016016_P001 | Maize | cytosol | 81.9 | 71.67 |
| CDY02551 | Canola | cytosol | 63.81 | 71.28 |
| AT1G52245.1 | Thale cress | cytosol | 63.81 | 71.28 |
| Bra014318.1-P | Field mustard | cytosol | 63.81 | 71.28 |
| GSMUA_Achr7P25190_001 | Banana | cytosol | 62.86 | 70.97 |
| TraesCS3D01G296300.1 | Wheat | cytosol | 66.67 | 70.71 |
| Bra018957.1-P | Field mustard | cytosol | 62.86 | 70.21 |
| CDY30135 | Canola | cytosol | 61.9 | 69.89 |
| Bra027190.1-P | Field mustard | cytosol | 61.9 | 69.89 |
| CDX97722 | Canola | cytosol | 61.9 | 69.89 |
| TraesCS1D01G203800.1 | Wheat | cytosol | 64.76 | 68.69 |
| KRH09878 | Soybean | cytosol | 61.9 | 68.42 |
| Solyc12g044240.1.1 | Tomato | cytosol | 60.95 | 68.09 |
| AT3G16120.1 | Thale cress | cytosol | 60.0 | 67.74 |
| KRH23441 | Soybean | cytosol | 60.95 | 67.37 |
| PGSC0003DMT400019607 | Potato | cytosol | 60.0 | 67.02 |
| Solyc03g120690.2.1 | Tomato | cytosol | 60.0 | 67.02 |
| PGSC0003DMT400006527 | Potato | cytosol | 59.05 | 65.96 |
| KRH60274 | Soybean | cytosol | 58.1 | 65.59 |
| KRH41561 | Soybean | cytosol | 57.14 | 64.52 |
| VIT_09s0002g04280.t01 | Wine grape | cytosol | 58.1 | 64.21 |
| VIT_11s0016g03770.t01 | Wine grape | cytosol | 57.14 | 62.5 |
| HORVU7Hr1G011400.2 | Barley | plastid | 93.33 | 60.49 |
| CDY47528 | Canola | cytosol | 56.19 | 45.38 |
| TraesCS6D01G275800.1 | Wheat | cytosol | 31.43 | 23.24 |
| TraesCS3D01G180700.1 | Wheat | cytosol | 28.57 | 21.28 |
| TraesCS2D01G325700.1 | Wheat | cytosol | 33.33 | 20.35 |
| TraesCS6D01G189000.1 | Wheat | cytosol | 33.33 | 16.83 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G056400.1 | EnsemblPlantsGene:TraesCS7D01G056400 | Gene3D:3.30.740.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005856 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030286 | InterPro:DLC_sf |
| InterPro:Dynein_light_chain_typ-1/2 | InterPro:IPR037177 | PANTHER:PTHR11886 | PANTHER:PTHR11886:SF48 | PFAM:PF01221 | SEG:seg |
| SMART:SM01375 | SUPFAM:SSF54648 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr7D:-:30240874..30241281
Molecular Weight (calculated)
11332.4 Da
IEP (calculated)
5.005
GRAVY (calculated)
0.283
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEGKAVVED TDMPARMQAA ATSAASRALD LFDVDDCRAI AGHIKTEFDR RYGVGWQCVV GASFGCFFTH SSGTFIYFSL ERLTFLLFKA APVAFATSCD
101: SSAVS
101: SSAVS
001: MLEGKAVMGD TDMKQTMKED ALSLASKALD CFDVTEPTQI ARFIKKEFDR SYGSGWQCIV GTHFGSFVTH CSGCFIHFSV GSLTILLFKG SVGEPAPPDR
101: CSS
101: CSS
Arabidopsis Description
Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZW5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.