Factsheet for GSMUA_Achr7P25190_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P04520_001
GSMUA_Achr2P13770_001
GSMUA_Achr3P05620_001
GSMUA_Achr3P05640_001
GSMUA_Achr4P33120_001
GSMUA_Achr5P07300_001
GSMUA_Achr6P00160_001
GSMUA_Achr7P15940_001
GSMUA_Achr8P09820_001
GSMUA_Achr9P13850_001
GSMUA_Achr9P13870_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16120.1	GSMUA_Achr3P05640_001	AT2G24550.1	21798944
AT3G16120.1	GSMUA_Achr7P15940_001	AT2G24550.1	21798944
AT3G16120.1	GSMUA_Achr9P13850_001	AT2G24550.1	21798944
AT3G16120.1	GSMUA_Achr10P...	AT3G21175.1	21798944
AT3G16120.1	GSMUA_Achr2P04520_001	AT3G21175.1	21798944
AT3G16120.1	GSMUA_Achr3P05620_001	AT3G21175.1	21798944
AT3G16120.1	GSMUA_Achr9P13870_001	AT3G21175.1	21798944
AT3G16120.1	GSMUA_Achr10P...	AT3G53320.1	21798944
AT3G16120.1	GSMUA_Achr5P07300_001	AT3G53320.1	21798944
AT3G16120.1	GSMUA_Achr2P13770_001	AT3G57540.1	21798944
AT3G16120.1	GSMUA_Achr4P33120_001	AT3G57540.1	21798944
AT3G16120.1	GSMUA_Achr6P00160_001	AT3G57540.1	21798944
AT3G16120.1	GSMUA_Achr8P09820_001	AT5G14910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P19900_001	Banana	cytosol	80.65	80.65
GSMUA_Achr10P...	Banana	cytosol	79.57	79.57
KRH09878	Soybean	cytosol	77.42	75.79
AT1G52245.1	Thale cress	cytosol	76.34	75.53
Solyc12g044240.1.1	Tomato	cytosol	76.34	75.53
GSMUA_Achr7P14400_001	Banana	cytosol	75.27	75.27
KRH23441	Soybean	cytosol	76.34	74.74
Bra014318.1-P	Field mustard	cytosol	75.27	74.47
PGSC0003DMT400019607	Potato	cytosol	75.27	74.47
CDY02551	Canola	cytosol	75.27	74.47
Bra018957.1-P	Field mustard	cytosol	74.19	73.4
AT3G16120.1	Thale cress	cytosol	73.12	73.12
KXG33416	Sorghum	cytosol	73.12	73.12
KRH60274	Soybean	cytosol	73.12	73.12
CDY30135	Canola	cytosol	73.12	73.12
Zm00001d043386_P001	Maize	cytosol	72.04	72.04
Bra027190.1-P	Field mustard	cytosol	72.04	72.04
CDX97722	Canola	cytosol	72.04	72.04
KRH41561	Soybean	cytosol	72.04	72.04
VIT_09s0002g04280.t01	Wine grape	cytosol	73.12	71.58
Solyc03g120690.2.1	Tomato	cytosol	72.04	71.28
PGSC0003DMT400006527	Potato	cytosol	70.97	70.21
GSMUA_Achr10P...	Banana	cytosol	76.34	69.61
VIT_11s0016g03770.t01	Wine grape	cytosol	69.89	67.71
TraesCS3D01G296300.1	Wheat	cytosol	72.04	67.68
TraesCS3A01G305600.1	Wheat	cytosol	70.97	66.67
TraesCS3B01G330900.1	Wheat	cytosol	70.97	66.67
TraesCS1D01G203800.1	Wheat	cytosol	69.89	65.66
Os02t0269200-01	Rice	cytosol	69.89	65.66
EES06648	Sorghum	cytosol	68.82	64.65
HORVU3Hr1G073190.1	Barley	cytosol	72.04	64.42
TraesCS7A01G061500.1	Wheat	cytosol	72.04	63.81
TraesCS4A01G427300.1	Wheat	cytosol	72.04	63.81
TraesCS2B01G143000.1	Wheat	cytosol	67.74	63.64
TraesCS5B01G340700.1	Wheat	cytosol	67.74	63.64
TraesCS1B01G110900.1	Wheat	cytosol	67.74	63.64
TraesCS2A01G245600.1	Wheat	cytosol	67.74	63.64
TraesCS7D01G056400.1	Wheat	cytosol	70.97	62.86
TraesCS2B01G427400.1	Wheat	cytosol	66.67	62.63
TraesCS7A01G284100.1	Wheat	cytosol, plastid	54.84	58.62
Zm00001d016016_P001	Maize	cytosol	68.82	53.33
CDY47528	Canola	cytosol	69.89	50.0
TraesCS4A01G428300.1	Wheat	cytosol	72.04	50.0
GSMUA_Achr2P14130_001	Banana	cytosol	55.91	47.71
HORVU7Hr1G011400.2	Barley	plastid	72.04	41.36
GSMUA_Achr9P29930_001	Banana	cytosol	49.46	41.07
GSMUA_Achr11P...	Banana	cytosol	32.26	38.96
GSMUA_Achr8P30040_001	Banana	cytosol	32.26	38.96
GSMUA_AchrUn_...	Banana	cytosol	30.11	31.46
GSMUA_Achr1P20660_001	Banana	cytosol	41.94	28.68
GSMUA_Achr3P22950_001	Banana	cytosol, mitochondrion	43.01	28.37
GSMUA_Achr7P12500_001	Banana	cytosol	40.86	26.21
GSMUA_Achr9P27210_001	Banana	nucleus	39.78	24.34

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674	GO:GO:0003774
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	GO:GO:0030286
EnsemblPlantsGene:GSMUA_Achr7G25190_001	EnsemblPlants:GSMUA_Achr7P25190_001	EnsemblPlants:GSMUA_Achr7T25190_001	InterPro:IPR037177	UniProt:M0TKK5	PFAM:PF01221
PANTHER:PTHR11886	PANTHER:PTHR11886:SF47	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI000296F96C	:

Description

Putative Dynein light chain LC6, flagellar outer arm [Source:GMGC_GENE;Acc:GSMUA_Achr7G25190_001]

Coordinates

chr7:-:26931600..26931961

Molecular Weight (calculated)

10321.4 Da

IEP (calculated)

4.459

GRAVY (calculated)

0.235

Length

93 amino acids

Sequence
(BLAST)

1: MLEGKATIQE TDMPLEMQMQ AMSSASEALD LFDALDCRNI AGHIKKEFDV VYGPGWQCVV GSSFGCFFTH SLGTFIYFHL ETLQFLIFKG ASA

Best Arabidopsis Sequence Match ( AT1G52245.1 )
(BLAST)

1: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFQL ETLKFLIFKG ASTP

Arabidopsis Description

At1g52250 [Source:UniProtKB/TrEMBL;Acc:Q9M810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.