Factsheet for GSMUA_Achr1P20660_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g05480.t01	Wine grape	cytosol	66.18	70.87
KRH08469	Soybean	cytosol	64.71	67.69
KRH60372	Soybean	cytosol	65.44	66.92
KRH70126	Soybean	cytosol	65.44	66.92
KRH41675	Soybean	cytosol	63.97	65.41
GSMUA_Achr7P12500_001	Banana	cytosol	68.38	64.14
PGSC0003DMT400081918	Potato	cytosol	61.03	63.85
Solyc01g005460.2.1	Tomato	cytosol	59.56	62.31
Bra012367.1-P	Field mustard	cytosol	58.82	61.54
CDY41457	Canola	cytosol	58.09	60.77
CDY04736	Canola	cytosol	58.09	60.77
CDX91705	Canola	cytosol	58.09	60.77
AT1G23220.1	Thale cress	cytosol	57.35	60.47
CDY21425	Canola	cytosol	57.35	60.0
Bra024572.1-P	Field mustard	cytosol	57.35	60.0
GSMUA_Achr9P27210_001	Banana	nucleus	66.91	59.87
CDY25775	Canola	cytosol	58.82	58.39
CDY12479	Canola	cytosol	58.09	57.66
TraesCS6D01G275800.1	Wheat	cytosol	56.62	54.23
TraesCS6A01G295200.1	Wheat	cytosol	58.82	54.05
TraesCS6B01G325300.1	Wheat	cytosol	58.09	53.38
Zm00001d017947_P001	Maize	cytosol, mitochondrion	57.35	50.65
Zm00001d051789_P002	Maize	cytosol	57.35	50.32
TraesCS2D01G325700.1	Wheat	cytosol	62.5	49.42
EES05573	Sorghum	cytosol	56.62	48.73
TraesCS2B01G344700.1	Wheat	cytosol	62.5	48.57
TraesCS2A01G337200.1	Wheat	cytosol	62.5	48.57
Os02t0733001-00	Rice	cytosol, mitochondrion, peroxisome	55.88	47.5
GSMUA_Achr11P...	Banana	cytosol	26.47	46.75
GSMUA_Achr8P30040_001	Banana	cytosol	26.47	46.75
Os04t0462600-01	Rice	cytosol	62.5	44.74
GSMUA_Achr10P...	Banana	cytosol	30.15	44.09
GSMUA_Achr2P19900_001	Banana	cytosol	30.15	44.09
Zm00001d003400_P001	Maize	cytosol	57.35	43.33
Zm00001d050905_P001	Maize	cytosol	61.03	42.78
EES07042	Sorghum	cytosol, mitochondrion	62.5	42.08
GSMUA_Achr7P25190_001	Banana	cytosol	28.68	41.94
TraesCS6B01G224400.1	Wheat	cytosol	63.24	41.55
TraesCS6D01G189000.1	Wheat	cytosol	63.24	41.35
Os02t0580400-01	Rice	cytosol	60.29	41.21
GSMUA_Achr7P14400_001	Banana	cytosol	27.94	40.86
GSMUA_Achr2P14130_001	Banana	cytosol	30.88	38.53
GSMUA_Achr10P...	Banana	cytosol	28.68	38.24
GSMUA_AchrUn_...	Banana	cytosol	22.79	34.83
GSMUA_Achr9P29930_001	Banana	cytosol	28.68	34.82
Zm00001d016977_P002	Maize	cytosol	61.03	31.32
EES10953	Sorghum	plastid	59.56	24.77
GSMUA_Achr3P22950_001	Banana	cytosol, mitochondrion	24.26	23.4

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674	GO:GO:0003774
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	GO:GO:0030286
EnsemblPlantsGene:GSMUA_Achr1G20660_001	EnsemblPlants:GSMUA_Achr1P20660_001	EnsemblPlants:GSMUA_Achr1T20660_001	InterPro:IPR037177	UniProt:M0S1M4	PFAM:PF01221
PANTHER:PTHR11886	PANTHER:PTHR11886:SF39	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI00029610EE	:

Description

Putative Dynein light chain LC6, flagellar outer arm [Source:GMGC_GENE;Acc:GSMUA_Achr1G20660_001]

Coordinates

chr1:-:15563788..15565640

Molecular Weight (calculated)

15450.6 Da

IEP (calculated)

8.061

GRAVY (calculated)

-0.179

Length

136 amino acids

Sequence
(BLAST)

001: MEDASAELER RSQYLTSLIQ RARVRAEDDG AEETQDVRVR AADMPVALQE RAFQCAREVL DSMPKLDNKR LALTLKKARI SFCLSEFDSL YGPAWHCIVG
101: RSFGSYVTHT LGGFLYFSID KVYILLFRTA VKTLGH

Best Arabidopsis Sequence Match ( AT1G23220.1 )
(BLAST)

001: MEGVELELER RSKFLNSLIQ KKKAKEQQDQ KDEFNVRVRA SDMPLPQQNR AFSLSREILN ATPGKADNKR LAHALKKDFD SAYGPAWHCI VGTSFGSYVT
101: HSTGGFLYFQ IDKVYVLLFK TAVEPLDQK

Arabidopsis Description

Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q9LR39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.