Factsheet for Bra024572.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21425	Canola	cytosol	100.0	100.0
Bra012367.1-P	Field mustard	cytosol	92.31	92.31
AT1G23220.1	Thale cress	cytosol	89.23	89.92
VIT_01s0011g05480.t01	Wine grape	cytosol	73.08	74.8
KRH08469	Soybean	cytosol	71.54	71.54
KRH60372	Soybean	cytosol	73.08	71.43
PGSC0003DMT400081918	Potato	cytosol	70.77	70.77
KRH41675	Soybean	cytosol	72.31	70.68
Solyc01g005460.2.1	Tomato	cytosol	69.23	69.23
KRH70126	Soybean	cytosol	70.0	68.42
GSMUA_Achr1P20660_001	Banana	cytosol	60.0	57.35
GSMUA_Achr7P12500_001	Banana	cytosol	62.31	55.86
GSMUA_Achr9P27210_001	Banana	nucleus	61.54	52.63
Bra020085.1-P	Field mustard	cytosol, mitochondrion, plastid	38.46	52.08
TraesCS6A01G295200.1	Wheat	cytosol	53.08	46.62
TraesCS6D01G275800.1	Wheat	cytosol	50.77	46.48
TraesCS6B01G325300.1	Wheat	cytosol	52.31	45.95
Zm00001d017947_P001	Maize	cytosol, mitochondrion	52.31	44.16
Zm00001d051789_P002	Maize	cytosol	52.31	43.87
TraesCS2D01G325700.1	Wheat	cytosol	56.92	43.02
Bra012751.1-P	Field mustard	cytosol	25.38	42.86
EES05573	Sorghum	cytosol	51.54	42.41
TraesCS2A01G337200.1	Wheat	cytosol	56.92	42.29
TraesCS2B01G344700.1	Wheat	cytosol	56.92	42.29
Os02t0733001-00	Rice	cytosol, mitochondrion, peroxisome	51.54	41.88
Bra014318.1-P	Field mustard	cytosol	30.0	41.49
Bra018957.1-P	Field mustard	cytosol	30.0	41.49
Zm00001d003400_P001	Maize	cytosol	56.92	41.11
Zm00001d050905_P001	Maize	cytosol	59.23	39.69
Os04t0462600-01	Rice	cytosol	57.69	39.47
Bra027190.1-P	Field mustard	cytosol	27.69	38.71
EES07042	Sorghum	cytosol, mitochondrion	60.0	38.61
Os02t0580400-01	Rice	cytosol	58.46	38.19
TraesCS6B01G224400.1	Wheat	cytosol	60.0	37.68
TraesCS6D01G189000.1	Wheat	cytosol	60.0	37.5
Bra026356.1-P	Field mustard	cytosol	26.15	33.66
Zm00001d016977_P002	Maize	cytosol	60.77	29.81
Bra038059.1-P	Field mustard	cytosol	27.69	29.03
Bra006541.1-P	Field mustard	nucleus	43.08	26.79
EES10953	Sorghum	plastid	55.38	22.02

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	EnsemblPlantsGene:Bra024572	EnsemblPlants:Bra024572.1	EnsemblPlants:Bra024572.1-P	InterPro:DLC_sf
InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016787	GO:GO:0030286	InterPro:IPR037177	UniProt:M4E717	PFAM:PF01221
PANTHER:PTHR11886	PANTHER:PTHR11886:SF39	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI0002542A00	:

Description

AT1G23220 (E=3e-061) | dynein light chain type 1 family protein

Coordinates

chrA09:-:24315374..24321405

Molecular Weight (calculated)

14796.8 Da

IEP (calculated)

9.442

GRAVY (calculated)

-0.344

Length

130 amino acids

Sequence
(BLAST)

001: MEGVELELER RSKFLNSLIQ QKKKAKEQHD LKDEFNVRVR ASDMPLVMQN RAFGLSRELL NATPGKADNK RLALSLKKDF DSAYGPAWHC IVGTSFGSYV
101: THSIGGFIYF QIDKVYVLLF KTAVEPLTNE

Best Arabidopsis Sequence Match ( AT1G23220.1 )
(BLAST)

001: MEGVELELER RSKFLNSLIQ KKKAKEQQDQ KDEFNVRVRA SDMPLPQQNR AFSLSREILN ATPGKADNKR LAHALKKDFD SAYGPAWHCI VGTSFGSYVT
101: HSTGGFLYFQ IDKVYVLLFK TAVEPLDQK

Arabidopsis Description

Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q9LR39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.