CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051789_P002	Maize	cytosol	92.41	94.19
Zm00001d017947_P001	Maize	cytosol, mitochondrion	91.14	93.51
TraesCS6D01G275800.1	Wheat	cytosol	77.22	85.92
TraesCS6B01G325300.1	Wheat	cytosol	79.11	84.46
TraesCS6A01G295200.1	Wheat	cytosol	76.58	81.76
Os02t0733001-00	Rice	cytosol, mitochondrion, peroxisome	77.22	76.25
VIT_01s0011g05480.t01	Wine grape	cytosol	50.0	62.2
KRH08469	Soybean	cytosol	48.73	59.23
KRH41675	Soybean	cytosol	49.37	58.65
KRH70126	Soybean	cytosol	48.73	57.89
KRH60372	Soybean	cytosol	48.1	57.14
PGSC0003DMT400081918	Potato	cytosol	46.84	56.92
GSMUA_Achr1P20660_001	Banana	cytosol	48.73	56.62
Solyc01g005460.2.1	Tomato	cytosol	45.57	55.38
CDY41457	Canola	cytosol	44.3	53.85
GSMUA_Achr7P12500_001	Banana	cytosol	48.73	53.1
Bra012367.1-P	Field mustard	cytosol	43.67	53.08
CDX91705	Canola	cytosol	43.67	53.08
AT1G23220.1	Thale cress	cytosol	43.04	52.71
CDY21425	Canola	cytosol	42.41	51.54
CDY04736	Canola	cytosol	42.41	51.54
Bra024572.1-P	Field mustard	cytosol	42.41	51.54
CDY25775	Canola	cytosol	43.67	50.37
CDY12479	Canola	cytosol	43.67	50.37
GSMUA_Achr9P27210_001	Banana	nucleus	48.1	50.0
EES07042	Sorghum	cytosol, mitochondrion	56.33	44.06
KXG33416	Sorghum	cytosol	22.78	38.71
EES06648	Sorghum	cytosol	22.78	36.36
EER97375	Sorghum	cytosol	24.68	34.21
EES00507	Sorghum	cytosol	25.95	31.54
OQU86998	Sorghum	cytosol, mitochondrion	37.34	31.22
OQU83188	Sorghum	plastid	20.89	26.19
EES10953	Sorghum	plastid	53.8	25.99

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	EntrezGene:8076891	UniProt:C5XZB2	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2
EnsemblPlants:EES05573	ProteinID:EES05573	ProteinID:EES05573.1	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005868	GO:GO:0005874	GO:GO:0006810	GO:GO:0007017	GO:GO:0008092
GO:GO:0008150	GO:GO:0008574	GO:GO:0009987	GO:GO:0010970	GO:GO:0016043	GO:GO:0016787
GO:GO:0030286	GO:GO:0045505	GO:GO:0051959	GO:GO:0060271	GO:GO:2000582	InterPro:IPR037177
PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF39	SMART:SM01375	EnsemblPlantsGene:SORBI_3004G248300	SUPFAM:SSF54648
UniParc:UPI0001A85517	RefSeq:XP_002452597.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:59544545..59546528

Molecular Weight (calculated)

17083.4 Da

IEP (calculated)

10.102

GRAVY (calculated)

-0.260

Length

158 amino acids

Sequence
(BLAST)

001: MREQQGSGDV AAGRRGGVIR SLLGVERRLG EGDADAAEGA VGVSSGKQPA AADSRGEERK AVVRVVAADM PPALQRRAFR CARDELAAMP HFPRRLEPKR
101: LALALKKEFD TAYGPAWHCI VGTSFGSYVT HARGGFLYFS VDKVYILLFR TAVEPSSH

Best Arabidopsis Sequence Match ( AT1G23220.1 )
(BLAST)

001: MEGVELELER RSKFLNSLIQ KKKAKEQQDQ KDEFNVRVRA SDMPLPQQNR AFSLSREILN ATPGKADNKR LAHALKKDFD SAYGPAWHCI VGTSFGSYVT
101: HSTGGFLYFQ IDKVYVLLFK TAVEPLDQK

Arabidopsis Description

Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q9LR39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.