CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003400_P001	Maize	cytosol	43.73	79.44
TraesCS2D01G325700.1	Wheat	cytosol	38.53	73.26
TraesCS2B01G344700.1	Wheat	cytosol	38.84	72.57
TraesCS2A01G337200.1	Wheat	cytosol	38.53	72.0
Os04t0462600-01	Rice	cytosol	38.84	66.84
VIT_01s0011g05480.t01	Wine grape	cytosol	25.38	65.35
EES07042	Sorghum	cytosol, mitochondrion	39.14	63.37
GSMUA_Achr7P12500_001	Banana	cytosol	27.52	62.07
KRH70126	Soybean	cytosol	24.77	60.9
KRH08469	Soybean	cytosol	24.16	60.77
KRH60372	Soybean	cytosol	24.46	60.15
KRH41675	Soybean	cytosol	24.46	60.15
GSMUA_Achr1P20660_001	Banana	cytosol	24.77	59.56
GSMUA_Achr9P27210_001	Banana	nucleus	27.52	59.21
Solyc01g005460.2.1	Tomato	cytosol	23.24	58.46
PGSC0003DMT400081918	Potato	cytosol	23.24	58.46
AT1G23220.1	Thale cress	cytosol	22.94	58.14
Bra012367.1-P	Field mustard	cytosol	22.63	56.92
CDX91705	Canola	cytosol	22.63	56.92
CDY41457	Canola	cytosol	22.32	56.15
Bra024572.1-P	Field mustard	cytosol	22.02	55.38
CDY04736	Canola	cytosol	22.02	55.38
CDY21425	Canola	cytosol	22.02	55.38
CDY25775	Canola	cytosol	22.63	54.01
CDY12479	Canola	cytosol	22.63	54.01
EES05573	Sorghum	cytosol	25.99	53.8
KXG33416	Sorghum	cytosol	11.31	39.78
EES06648	Sorghum	cytosol	10.7	35.35
EER97375	Sorghum	cytosol	11.62	33.33
EES00507	Sorghum	cytosol	12.54	31.54
OQU86998	Sorghum	cytosol, mitochondrion	18.04	31.22
OQU83188	Sorghum	plastid	10.09	26.19

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	UniProt:C5Y9W3	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	EnsemblPlants:EES10953
ProteinID:EES10953	ProteinID:EES10953.2	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005868
GO:GO:0006810	GO:GO:0007017	GO:GO:0008092	GO:GO:0008150	GO:GO:0008574	GO:GO:0009987
GO:GO:0010970	GO:GO:0016043	GO:GO:0016787	GO:GO:0030286	GO:GO:0045505	GO:GO:0051959
GO:GO:0060271	GO:GO:2000582	InterPro:IPR037177	PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF61
SMART:SM01375	EnsemblPlantsGene:SORBI_3006G108500	SUPFAM:SSF54648	UniParc:UPI00081AB8FB	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:47789710..47794098

Molecular Weight (calculated)

35587.0 Da

IEP (calculated)

11.042

GRAVY (calculated)

-0.528

Length

327 amino acids

Sequence
(BLAST)

001: MKDISVVLKG AWCHSYPNKE AAPNSKNHRF VWGRRKRKLT RLVSKAAPTN SWSSNQTSRR TPRRAKAAKP QGKRKTQPTT TPCLPADHLA ISLLLLSSHA
101: GSPCPIATAA AECRRGRIRP QRRPAASPLE SGARAPGRMD PASEELDRRS RYLSALVRRA KLADPPQPEP EPEPEPEVVE TKAKAKAGVE PELKASPRPH
201: VGGEGKGVKE EAKASAAVKA RGEVKAAEGR KVAVCVRAAD MPLPLQRRAV RIAVEAVAAM PRLESKRLAL ALKKDFDTTY GPAWHCIVGT SFGSYVTHSL
301: GGFLYFSVDK AYILLFRTAV QPLAQPQ

Best Arabidopsis Sequence Match ( AT1G23220.1 )
(BLAST)

001: MEGVELELER RSKFLNSLIQ KKKAKEQQDQ KDEFNVRVRA SDMPLPQQNR AFSLSREILN ATPGKADNKR LAHALKKDFD SAYGPAWHCI VGTSFGSYVT
101: HSTGGFLYFQ IDKVYVLLFK TAVEPLDQK

Arabidopsis Description

Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q9LR39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.