CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88891
EER88899
EER99130
EER99573
EES05886
KXG25581
KXG36299
OQU90788

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16120.1	EER88891	AT2G24550.1	21798944
AT3G16120.1	EER99130	AT2G24550.1	21798944
AT3G16120.1	KXG25581	AT2G24550.1	21798944
AT3G16120.1	EER88899	AT3G21175.1	21798944
AT3G16120.1	KXG36299	AT3G53320.1	21798944
AT3G16120.1	EER99573	AT3G57540.1	21798944
AT3G16120.1	OQU90788	AT3G57540.1	21798944
AT3G16120.1	EES05886	AT5G14910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043386_P001	Maize	cytosol	95.7	95.7
TraesCS3A01G305600.1	Wheat	cytosol	90.32	84.85
TraesCS3B01G330900.1	Wheat	cytosol	90.32	84.85
TraesCS3D01G296300.1	Wheat	cytosol	89.25	83.84
TraesCS1D01G203800.1	Wheat	cytosol	88.17	82.83
TraesCS2A01G245600.1	Wheat	cytosol	86.02	80.81
TraesCS2B01G143000.1	Wheat	cytosol	84.95	79.8
HORVU3Hr1G073190.1	Barley	cytosol	88.17	78.85
TraesCS1B01G110900.1	Wheat	cytosol	83.87	78.79
TraesCS5B01G340700.1	Wheat	cytosol	83.87	78.79
TraesCS2B01G427400.1	Wheat	cytosol	82.8	77.78
TraesCS7A01G284100.1	Wheat	cytosol, plastid	70.97	75.86
KRH09878	Soybean	cytosol	76.34	74.74
KRH23441	Soybean	cytosol	75.27	73.68
CDY02551	Canola	cytosol	74.19	73.4
Solyc12g044240.1.1	Tomato	cytosol	74.19	73.4
Bra018957.1-P	Field mustard	cytosol	74.19	73.4
Bra014318.1-P	Field mustard	cytosol	74.19	73.4
GSMUA_Achr7P25190_001	Banana	cytosol	73.12	73.12
Solyc03g120690.2.1	Tomato	cytosol	73.12	72.34
PGSC0003DMT400019607	Potato	cytosol	73.12	72.34
AT1G52245.1	Thale cress	cytosol	73.12	72.34
VIT_09s0002g04280.t01	Wine grape	cytosol	73.12	71.58
PGSC0003DMT400006527	Potato	cytosol	72.04	71.28
AT3G16120.1	Thale cress	cytosol	69.89	69.89
CDY30135	Canola	cytosol	69.89	69.89
CDX97722	Canola	cytosol	69.89	69.89
Bra027190.1-P	Field mustard	cytosol	69.89	69.89
KRH60274	Soybean	cytosol	68.82	68.82
KRH41561	Soybean	cytosol	67.74	67.74
EES06648	Sorghum	cytosol	70.97	66.67
VIT_11s0016g03770.t01	Wine grape	cytosol	67.74	65.62
CDY47528	Canola	cytosol	66.67	47.69
EER97375	Sorghum	cytosol	51.61	42.11
EES00507	Sorghum	cytosol	38.71	27.69
EES05573	Sorghum	cytosol	38.71	22.78
OQU83188	Sorghum	plastid	27.96	20.63
OQU86998	Sorghum	cytosol, mitochondrion	39.78	19.58
EES07042	Sorghum	cytosol, mitochondrion	39.78	18.32
EES10953	Sorghum	plastid	39.78	11.31

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	UniProt:A0A1B6Q668	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674
GO:GO:0003774	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787
GO:GO:0030286	InterPro:IPR037177	EnsemblPlants:KXG33416	ProteinID:KXG33416	ProteinID:KXG33416.1	PFAM:PF01221
PANTHER:PTHR11886	PANTHER:PTHR11886:SF47	SMART:SM01375	EnsemblPlantsGene:SORBI_3003G303100	SUPFAM:SSF54648	UniParc:UPI0003C6652B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:63372759..63374708

Molecular Weight (calculated)

10224.3 Da

IEP (calculated)

8.075

GRAVY (calculated)

0.089

Length

93 amino acids

Sequence
(BLAST)

1: MLEGKAVVED TDMPAKMQAQ AMSAASRALD RFDVLDCRSI AAHIKKEFDA IHGPGWQCVV GSSFGCYFTH SKGSFVYFRL ESLRFLVFKG AAA

Best Arabidopsis Sequence Match ( AT1G52245.1 )
(BLAST)

1: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFQL ETLKFLIFKG ASTP

Arabidopsis Description

At1g52250 [Source:UniProtKB/TrEMBL;Acc:Q9M810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.